src/glpqmd.c
author Alpar Juttner <alpar@cs.elte.hu>
Sun, 05 Dec 2010 17:35:23 +0100
changeset 2 4c8956a7bdf4
permissions -rw-r--r--
Set up CMAKE build environment
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/* glpqmd.c (quotient minimum degree algorithm) */
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/***********************************************************************
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*  This code is part of GLPK (GNU Linear Programming Kit).
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*
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*  THIS CODE IS THE RESULT OF TRANSLATION OF THE FORTRAN SUBROUTINES
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*  GENQMD, QMDRCH, QMDQT, QMDUPD, AND QMDMRG FROM THE BOOK:
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*
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*  ALAN GEORGE, JOSEPH W-H LIU. COMPUTER SOLUTION OF LARGE SPARSE
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*  POSITIVE DEFINITE SYSTEMS. PRENTICE-HALL, 1981.
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*
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*  THE TRANSLATION HAS BEEN DONE WITH THE PERMISSION OF THE AUTHORS
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*  OF THE ORIGINAL FORTRAN SUBROUTINES: ALAN GEORGE AND JOSEPH LIU,
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*  UNIVERSITY OF WATERLOO, WATERLOO, ONTARIO, CANADA.
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*
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*  The translation was made by Andrew Makhorin <mao@gnu.org>.
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*
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*  GLPK is free software: you can redistribute it and/or modify it
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*  under the terms of the GNU General Public License as published by
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*  the Free Software Foundation, either version 3 of the License, or
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*  (at your option) any later version.
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*
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*  GLPK is distributed in the hope that it will be useful, but WITHOUT
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*  ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
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*  or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
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*  License for more details.
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*
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*  You should have received a copy of the GNU General Public License
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*  along with GLPK. If not, see <http://www.gnu.org/licenses/>.
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***********************************************************************/
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#include "glpqmd.h"
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/***********************************************************************
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*  NAME
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*
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*  genqmd - GENeral Quotient Minimum Degree algorithm
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*
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*  SYNOPSIS
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*
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*  #include "glpqmd.h"
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*  void genqmd(int *neqns, int xadj[], int adjncy[], int perm[],
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*     int invp[], int deg[], int marker[], int rchset[], int nbrhd[],
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*     int qsize[], int qlink[], int *nofsub);
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*
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*  PURPOSE
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*
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*  This routine implements the minimum degree algorithm. It makes use
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*  of the implicit representation of the elimination graph by quotient
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*  graphs, and the notion of indistinguishable nodes.
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*
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*  CAUTION
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*
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*  The adjancy vector adjncy will be destroyed.
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*
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*  INPUT PARAMETERS
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*
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*  neqns  - number of equations;
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*  (xadj, adjncy) -
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*           the adjancy structure.
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*
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*  OUTPUT PARAMETERS
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*
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*  perm   - the minimum degree ordering;
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*  invp   - the inverse of perm.
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*
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*  WORKING PARAMETERS
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*
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*  deg    - the degree vector. deg[i] is negative means node i has been
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*           numbered;
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*  marker - a marker vector, where marker[i] is negative means node i
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*           has been merged with another nodeand thus can be ignored;
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*  rchset - vector used for the reachable set;
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*  nbrhd  - vector used for neighborhood set;
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*  qsize  - vector used to store the size of indistinguishable
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*           supernodes;
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*  qlink  - vector used to store indistinguishable nodes, i, qlink[i],
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*           qlink[qlink[i]], ... are the members of the supernode
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*           represented by i.
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*
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*  PROGRAM SUBROUTINES
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*
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*  qmdrch, qmdqt, qmdupd.
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***********************************************************************/
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void genqmd(int *_neqns, int xadj[], int adjncy[], int perm[],
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      int invp[], int deg[], int marker[], int rchset[], int nbrhd[],
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      int qsize[], int qlink[], int *_nofsub)
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{     int inode, ip, irch, j, mindeg, ndeg, nhdsze, node, np, num,
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         nump1, nxnode, rchsze, search, thresh;
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#     define neqns  (*_neqns)
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#     define nofsub (*_nofsub)
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      /* Initialize degree vector and other working variables. */
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      mindeg = neqns;
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      nofsub = 0;
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      for (node = 1; node <= neqns; node++)
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      {  perm[node] = node;
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         invp[node] = node;
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         marker[node] = 0;
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         qsize[node] = 1;
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         qlink[node] = 0;
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         ndeg = xadj[node+1] - xadj[node];
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         deg[node] = ndeg;
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         if (ndeg < mindeg) mindeg = ndeg;
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      }
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      num = 0;
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      /* Perform threshold search to get a node of min degree.
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         Variable search point to where search should start. */
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s200: search = 1;
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      thresh = mindeg;
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      mindeg = neqns;
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s300: nump1 = num + 1;
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      if (nump1 > search) search = nump1;
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      for (j = search; j <= neqns; j++)
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      {  node = perm[j];
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         if (marker[node] >= 0)
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         {  ndeg = deg[node];
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            if (ndeg <= thresh) goto s500;
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            if (ndeg < mindeg) mindeg = ndeg;
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         }
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      }
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      goto s200;
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      /* Node has minimum degree. Find its reachable sets by calling
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         qmdrch. */
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s500: search = j;
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      nofsub += deg[node];
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      marker[node] = 1;
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      qmdrch(&node, xadj, adjncy, deg, marker, &rchsze, rchset, &nhdsze,
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         nbrhd);
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      /* Eliminate all nodes indistinguishable from node. They are given
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         by node, qlink[node], ... . */
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      nxnode = node;
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s600: num++;
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      np = invp[nxnode];
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      ip = perm[num];
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      perm[np] = ip;
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      invp[ip] = np;
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      perm[num] = nxnode;
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      invp[nxnode] = num;
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      deg[nxnode] = -1;
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      nxnode = qlink[nxnode];
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      if (nxnode > 0) goto s600;
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      if (rchsze > 0)
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      {  /* Update the degrees of the nodes in the reachable set and
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            identify indistinguishable nodes. */
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         qmdupd(xadj, adjncy, &rchsze, rchset, deg, qsize, qlink,
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            marker, &rchset[rchsze+1], &nbrhd[nhdsze+1]);
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         /* Reset marker value of nodes in reach set. Update threshold
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            value for cyclic search. Also call qmdqt to form new
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            quotient graph. */
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         marker[node] = 0;
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         for (irch = 1; irch <= rchsze; irch++)
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         {  inode = rchset[irch];
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            if (marker[inode] >= 0)
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            {  marker[inode] = 0;
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               ndeg = deg[inode];
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               if (ndeg < mindeg) mindeg = ndeg;
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               if (ndeg <= thresh)
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               {  mindeg = thresh;
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                  thresh = ndeg;
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                  search = invp[inode];
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               }
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            }
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         }
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         if (nhdsze > 0)
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            qmdqt(&node, xadj, adjncy, marker, &rchsze, rchset, nbrhd);
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      }
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      if (num < neqns) goto s300;
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      return;
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#     undef neqns
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#     undef nofsub
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}
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/***********************************************************************
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*  NAME
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*
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*  qmdrch - Quotient MD ReaCHable set
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*
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*  SYNOPSIS
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*
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*  #include "glpqmd.h"
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*  void qmdrch(int *root, int xadj[], int adjncy[], int deg[],
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*     int marker[], int *rchsze, int rchset[], int *nhdsze,
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*     int nbrhd[]);
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*
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*  PURPOSE
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*
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*  This subroutine determines the reachable set of a node through a
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*  given subset. The adjancy structure is assumed to be stored in a
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*  quotient graph format.
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* 
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*  INPUT PARAMETERS
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*
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*  root   - the given node not in the subset;
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*  (xadj, adjncy) -
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*           the adjancy structure pair;
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*  deg    - the degree vector. deg[i] < 0 means the node belongs to the
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*           given subset.
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*
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*  OUTPUT PARAMETERS
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*
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*  (rchsze, rchset) -
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*           the reachable set;
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*  (nhdsze, nbrhd) -
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*           the neighborhood set.
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*
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*  UPDATED PARAMETERS
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*
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*  marker - the marker vector for reach and nbrhd sets. > 0 means the
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*           node is in reach set. < 0 means the node has been merged
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*           with others in the quotient or it is in nbrhd set.
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***********************************************************************/
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void qmdrch(int *_root, int xadj[], int adjncy[], int deg[],
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      int marker[], int *_rchsze, int rchset[], int *_nhdsze,
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      int nbrhd[])
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{     int i, istop, istrt, j, jstop, jstrt, nabor, node;
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#     define root   (*_root)
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#     define rchsze (*_rchsze)
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#     define nhdsze (*_nhdsze)
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      /* Loop through the neighbors of root in the quotient graph. */
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      nhdsze = 0;
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      rchsze = 0;
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      istrt = xadj[root];
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      istop = xadj[root+1] - 1;
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      if (istop < istrt) return;
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      for (i = istrt; i <= istop; i++)
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      {  nabor = adjncy[i];
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         if (nabor == 0) return;
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         if (marker[nabor] == 0)
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         {  if (deg[nabor] >= 0)
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            {  /* Include nabor into the reachable set. */
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               rchsze++;
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               rchset[rchsze] = nabor;
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               marker[nabor] = 1;
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               goto s600;
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            }
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            /* nabor has been eliminated. Find nodes reachable from
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               it. */
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            marker[nabor] = -1;
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            nhdsze++;
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            nbrhd[nhdsze] = nabor;
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s300:       jstrt = xadj[nabor];
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            jstop = xadj[nabor+1] - 1;
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            for (j = jstrt; j <= jstop; j++)
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            {  node = adjncy[j];
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               nabor = - node;
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               if (node < 0) goto s300;
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               if (node == 0) goto s600;
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               if (marker[node] == 0)
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               {  rchsze++;
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                  rchset[rchsze] = node;
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                  marker[node] = 1;
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               }
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            }
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         }
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s600:    ;
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      }
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      return;
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#     undef root
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#     undef rchsze
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#     undef nhdsze
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}
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/***********************************************************************
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*  NAME
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*
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*  qmdqt - Quotient MD Quotient graph Transformation
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*
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*  SYNOPSIS
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*
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*  #include "glpqmd.h"
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*  void qmdqt(int *root, int xadj[], int adjncy[], int marker[],
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*     int *rchsze, int rchset[], int nbrhd[]);
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*
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*  PURPOSE
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*
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*  This subroutine performs the quotient graph transformation after a
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*  node has been eliminated.
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*
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*  INPUT PARAMETERS
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*
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*  root   - the node just eliminated. It becomes the representative of
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*           the new supernode;
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*  (xadj, adjncy) -
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*           the adjancy structure;
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*  (rchsze, rchset) -
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*           the reachable set of root in the old quotient graph;
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*  nbrhd  - the neighborhood set which will be merged with root to form
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*           the new supernode;
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*  marker - the marker vector.
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*
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*  UPDATED PARAMETERS
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*
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*  adjncy - becomes the adjncy of the quotient graph.
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***********************************************************************/
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void qmdqt(int *_root, int xadj[], int adjncy[], int marker[],
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      int *_rchsze, int rchset[], int nbrhd[])
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{     int inhd, irch, j, jstop, jstrt, link, nabor, node;
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#     define root   (*_root)
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#     define rchsze (*_rchsze)
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      irch = 0;
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      inhd = 0;
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      node = root;
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s100: jstrt = xadj[node];
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      jstop = xadj[node+1] - 2;
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      if (jstop >= jstrt)
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      {  /* Place reach nodes into the adjacent list of node. */
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         for (j = jstrt; j <= jstop; j++)
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         {  irch++;
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            adjncy[j] = rchset[irch];
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            if (irch >= rchsze) goto s400;
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         }
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      }
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      /* Link to other space provided by the nbrhd set. */
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      link = adjncy[jstop+1];
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      node = - link;
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      if (link >= 0)
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      {  inhd++;
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         node = nbrhd[inhd];
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         adjncy[jstop+1] = - node;
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      }
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      goto s100;
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      /* All reachable nodes have been saved. End the adjacent list.
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         Add root to the neighborhood list of each node in the reach
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         set. */
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s400: adjncy[j+1] = 0;
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      for (irch = 1; irch <= rchsze; irch++)
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      {  node = rchset[irch];
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         if (marker[node] >= 0)
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         {  jstrt = xadj[node];
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            jstop = xadj[node+1] - 1;
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            for (j = jstrt; j <= jstop; j++)
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            {  nabor = adjncy[j];
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               if (marker[nabor] < 0)
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               {  adjncy[j] = root;
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                  goto s600;
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               }
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            }
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         }
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s600:    ;
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      }
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      return;
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#     undef root
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#     undef rchsze
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}
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/***********************************************************************
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*  NAME
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*
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*  qmdupd - Quotient MD UPDate
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*
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*  SYNOPSIS
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*
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*  #include "glpqmd.h"
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*  void qmdupd(int xadj[], int adjncy[], int *nlist, int list[],
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*     int deg[], int qsize[], int qlink[], int marker[], int rchset[],
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*     int nbrhd[]);
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*
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*  PURPOSE
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*
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*  This routine performs degree update for a set of nodes in the minimum
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*  degree algorithm.
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*
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*  INPUT PARAMETERS
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*
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*  (xadj, adjncy) -
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*           the adjancy structure;
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*  (nlist, list) -
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*           the list of nodes whose degree has to be updated.
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*
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*  UPDATED PARAMETERS
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*
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*  deg    - the degree vector;
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*  qsize  - size of indistinguishable supernodes;
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*  qlink  - linked list for indistinguishable nodes;
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*  marker - used to mark those nodes in reach/nbrhd sets.
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*
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*  WORKING PARAMETERS
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*
alpar@1
   382
*  rchset - the reachable set;
alpar@1
   383
*  nbrhd  - the neighborhood set.
alpar@1
   384
*
alpar@1
   385
*  PROGRAM SUBROUTINES
alpar@1
   386
*
alpar@1
   387
*  qmdmrg.
alpar@1
   388
***********************************************************************/
alpar@1
   389
alpar@1
   390
void qmdupd(int xadj[], int adjncy[], int *_nlist, int list[],
alpar@1
   391
      int deg[], int qsize[], int qlink[], int marker[], int rchset[],
alpar@1
   392
      int nbrhd[])
alpar@1
   393
{     int deg0, deg1, il, inhd, inode, irch, j, jstop, jstrt, mark,
alpar@1
   394
         nabor, nhdsze, node, rchsze;
alpar@1
   395
#     define nlist  (*_nlist)
alpar@1
   396
      /* Find all eliminated supernodes that are adjacent to some nodes
alpar@1
   397
         in the given list. Put them into (nhdsze, nbrhd). deg0 contains
alpar@1
   398
         the number of nodes in the list. */
alpar@1
   399
      if (nlist <= 0) return;
alpar@1
   400
      deg0 = 0;
alpar@1
   401
      nhdsze = 0;
alpar@1
   402
      for (il = 1; il <= nlist; il++)
alpar@1
   403
      {  node = list[il];
alpar@1
   404
         deg0 += qsize[node];
alpar@1
   405
         jstrt = xadj[node];
alpar@1
   406
         jstop = xadj[node+1] - 1;
alpar@1
   407
         for (j = jstrt; j <= jstop; j++)
alpar@1
   408
         {  nabor = adjncy[j];
alpar@1
   409
            if (marker[nabor] == 0 && deg[nabor] < 0)
alpar@1
   410
            {  marker[nabor] = -1;
alpar@1
   411
               nhdsze++;
alpar@1
   412
               nbrhd[nhdsze] = nabor;
alpar@1
   413
            }
alpar@1
   414
         }
alpar@1
   415
      }
alpar@1
   416
      /* Merge indistinguishable nodes in the list by calling the
alpar@1
   417
         subroutine qmdmrg. */
alpar@1
   418
      if (nhdsze > 0)
alpar@1
   419
         qmdmrg(xadj, adjncy, deg, qsize, qlink, marker, &deg0, &nhdsze,
alpar@1
   420
            nbrhd, rchset, &nbrhd[nhdsze+1]);
alpar@1
   421
      /* Find the new degrees of the nodes that have not been merged. */
alpar@1
   422
      for (il = 1; il <= nlist; il++)
alpar@1
   423
      {  node = list[il];
alpar@1
   424
         mark = marker[node];
alpar@1
   425
         if (mark == 0 || mark == 1)
alpar@1
   426
         {  marker[node] = 2;
alpar@1
   427
            qmdrch(&node, xadj, adjncy, deg, marker, &rchsze, rchset,
alpar@1
   428
               &nhdsze, nbrhd);
alpar@1
   429
            deg1 = deg0;
alpar@1
   430
            if (rchsze > 0)
alpar@1
   431
            {  for (irch = 1; irch <= rchsze; irch++)
alpar@1
   432
               {  inode = rchset[irch];
alpar@1
   433
                  deg1 += qsize[inode];
alpar@1
   434
                  marker[inode] = 0;
alpar@1
   435
               }
alpar@1
   436
            }
alpar@1
   437
            deg[node] = deg1 - 1;
alpar@1
   438
            if (nhdsze > 0)
alpar@1
   439
            {  for (inhd = 1; inhd <= nhdsze; inhd++)
alpar@1
   440
               {  inode = nbrhd[inhd];
alpar@1
   441
                  marker[inode] = 0;
alpar@1
   442
               }
alpar@1
   443
            }
alpar@1
   444
         }
alpar@1
   445
      }
alpar@1
   446
      return;
alpar@1
   447
#     undef nlist
alpar@1
   448
}
alpar@1
   449
alpar@1
   450
/***********************************************************************
alpar@1
   451
*  NAME
alpar@1
   452
*
alpar@1
   453
*  qmdmrg - Quotient MD MeRGe
alpar@1
   454
*
alpar@1
   455
*  SYNOPSIS
alpar@1
   456
*
alpar@1
   457
*  #include "qmdmrg.h"
alpar@1
   458
*  void qmdmrg(int xadj[], int adjncy[], int deg[], int qsize[],
alpar@1
   459
*     int qlink[], int marker[], int *deg0, int *nhdsze, int nbrhd[],
alpar@1
   460
*     int rchset[], int ovrlp[]);
alpar@1
   461
*
alpar@1
   462
*  PURPOSE
alpar@1
   463
*
alpar@1
   464
*  This routine merges indistinguishable nodes in the minimum degree
alpar@1
   465
*  ordering algorithm. It also computes the new degrees of these new
alpar@1
   466
*  supernodes.
alpar@1
   467
*
alpar@1
   468
*  INPUT PARAMETERS
alpar@1
   469
*
alpar@1
   470
*  (xadj, adjncy) -
alpar@1
   471
*           the adjancy structure;
alpar@1
   472
*  deg0   - the number of nodes in the given set;
alpar@1
   473
*  (nhdsze, nbrhd) -
alpar@1
   474
*           the set of eliminated supernodes adjacent to some nodes in
alpar@1
   475
*           the set.
alpar@1
   476
*
alpar@1
   477
*  UPDATED PARAMETERS
alpar@1
   478
*
alpar@1
   479
*  deg    - the degree vector;
alpar@1
   480
*  qsize  - size of indistinguishable nodes;
alpar@1
   481
*  qlink  - linked list for indistinguishable nodes;
alpar@1
   482
*  marker - the given set is given by those nodes with marker value set
alpar@1
   483
*           to 1. Those nodes with degree updated will have marker value
alpar@1
   484
*           set to 2.
alpar@1
   485
*
alpar@1
   486
*  WORKING PARAMETERS
alpar@1
   487
*
alpar@1
   488
*  rchset - the reachable set;
alpar@1
   489
*  ovrlp  - temp vector to store the intersection of two reachable sets.
alpar@1
   490
***********************************************************************/
alpar@1
   491
alpar@1
   492
void qmdmrg(int xadj[], int adjncy[], int deg[], int qsize[],
alpar@1
   493
      int qlink[], int marker[], int *_deg0, int *_nhdsze, int nbrhd[],
alpar@1
   494
      int rchset[], int ovrlp[])
alpar@1
   495
{     int deg1, head, inhd, iov, irch, j, jstop, jstrt, link, lnode,
alpar@1
   496
         mark, mrgsze, nabor, node, novrlp, rchsze, root;
alpar@1
   497
#     define deg0   (*_deg0)
alpar@1
   498
#     define nhdsze (*_nhdsze)
alpar@1
   499
      /* Initialization. */
alpar@1
   500
      if (nhdsze <= 0) return;
alpar@1
   501
      for (inhd = 1; inhd <= nhdsze; inhd++)
alpar@1
   502
      {  root = nbrhd[inhd];
alpar@1
   503
         marker[root] = 0;
alpar@1
   504
      }
alpar@1
   505
      /* Loop through each eliminated supernode in the set
alpar@1
   506
         (nhdsze, nbrhd). */
alpar@1
   507
      for (inhd = 1; inhd <= nhdsze; inhd++)
alpar@1
   508
      {  root = nbrhd[inhd];
alpar@1
   509
         marker[root] = -1;
alpar@1
   510
         rchsze = 0;
alpar@1
   511
         novrlp = 0;
alpar@1
   512
         deg1 = 0;
alpar@1
   513
s200:    jstrt = xadj[root];
alpar@1
   514
         jstop = xadj[root+1] - 1;
alpar@1
   515
         /* Determine the reachable set and its intersection with the
alpar@1
   516
            input reachable set. */
alpar@1
   517
         for (j = jstrt; j <= jstop; j++)
alpar@1
   518
         {  nabor = adjncy[j];
alpar@1
   519
            root = - nabor;
alpar@1
   520
            if (nabor < 0) goto s200;
alpar@1
   521
            if (nabor == 0) break;
alpar@1
   522
            mark = marker[nabor];
alpar@1
   523
            if (mark == 0)
alpar@1
   524
            {  rchsze++;
alpar@1
   525
               rchset[rchsze] = nabor;
alpar@1
   526
               deg1 += qsize[nabor];
alpar@1
   527
               marker[nabor] = 1;
alpar@1
   528
            }
alpar@1
   529
            else if (mark == 1)
alpar@1
   530
            {  novrlp++;
alpar@1
   531
               ovrlp[novrlp] = nabor;
alpar@1
   532
               marker[nabor] = 2;
alpar@1
   533
            }
alpar@1
   534
         }
alpar@1
   535
         /* From the overlapped set, determine the nodes that can be
alpar@1
   536
            merged together. */
alpar@1
   537
         head = 0;
alpar@1
   538
         mrgsze = 0;
alpar@1
   539
         for (iov = 1; iov <= novrlp; iov++)
alpar@1
   540
         {  node = ovrlp[iov];
alpar@1
   541
            jstrt = xadj[node];
alpar@1
   542
            jstop = xadj[node+1] - 1;
alpar@1
   543
            for (j = jstrt; j <= jstop; j++)
alpar@1
   544
            {  nabor = adjncy[j];
alpar@1
   545
               if (marker[nabor] == 0)
alpar@1
   546
               {  marker[node] = 1;
alpar@1
   547
                  goto s1100;
alpar@1
   548
               }
alpar@1
   549
            }
alpar@1
   550
            /* Node belongs to the new merged supernode. Update the
alpar@1
   551
               vectors qlink and qsize. */
alpar@1
   552
            mrgsze += qsize[node];
alpar@1
   553
            marker[node] = -1;
alpar@1
   554
            lnode = node;
alpar@1
   555
s900:       link = qlink[lnode];
alpar@1
   556
            if (link > 0)
alpar@1
   557
            {  lnode = link;
alpar@1
   558
               goto s900;
alpar@1
   559
            }
alpar@1
   560
            qlink[lnode] = head;
alpar@1
   561
            head = node;
alpar@1
   562
s1100:      ;
alpar@1
   563
         }
alpar@1
   564
         if (head > 0)
alpar@1
   565
         {  qsize[head] = mrgsze;
alpar@1
   566
            deg[head] = deg0 + deg1 - 1;
alpar@1
   567
            marker[head] = 2;
alpar@1
   568
         }
alpar@1
   569
         /* Reset marker values. */
alpar@1
   570
         root = nbrhd[inhd];
alpar@1
   571
         marker[root] = 0;
alpar@1
   572
         if (rchsze > 0)
alpar@1
   573
         {  for (irch = 1; irch <= rchsze; irch++)
alpar@1
   574
            {  node = rchset[irch];
alpar@1
   575
               marker[node] = 0;
alpar@1
   576
            }
alpar@1
   577
         }
alpar@1
   578
      }
alpar@1
   579
      return;
alpar@1
   580
#     undef deg0
alpar@1
   581
#     undef nhdsze
alpar@1
   582
}
alpar@1
   583
alpar@1
   584
/* eof */