Port DIMACS tools from svn -r3516

Namely,
- apply migrate script
- apply unify sources
- break long lines
- Fixes the compilation
- dim_to_lgf -> dimacs-to-lgf
- better .hgignore
- shorten the doc of dimacs-to-lgf

Merge

Doc improvements for elevator classes (#174)

Don't assume that the default maps are reference maps (in Elevator)

Avoid STL panic at Elevator when compiled with -D_GLIBCXX_DEBUG

Rename markToBottom() to dirtyTopButOne() + better doc (#174)

Port Elevator from svn -r3516 (#174)
- the unify script hes also been applied

Merge

Bugfix in Random (#173)

- operator()s always return a double now
- the faulty real<Num>(Num) and real<Num>(Num,Num) have been removed

chg-len.py uses the Mercurial API directly

This makes chg-len.py much faster.

Merge

Extend test cases for graphs and digraphs (#172)

Bug fix in SmartGraph::restoreSnapshot() (#171)

Avoid bit operator precedence warning with gcc-4.3

Some of these warnings are actually revealed real bugs

Merge

Critical bug fix in SmartDigraph::split() #170

Merge

Add missing tags and functions for item counting in SmartGraph (#3)

Hide "used files" on the doc pages

Merge

Rework hypercube graph implementation to be undirected (#57)

Port hypercube digraph structure from SVN 3503 (#57)

Revert to the canonical way of customizing CXXFLAGS

A default list of compiler flags is set via AM_CXXFLAGS Automake variable.
However this gets overridden by per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS in case the foo target). Because of this you should append
$(AM_CXXFLAGS) to the end of the per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS = ... $(AM_CXXFLAGS)).

After this default list of flags the contents of the CXXFLAGS user variable is
passed to the compiler. This variable has a default value determined by
configure (in case of g++ it is '-g -O2'). You can override this by specifying
CXXFLAGS when invoking make (e.g. make CXXFLAGS='-O3').

Merge

Doc improvements for the graph related tools in lemon/bits

Add missing tags and indicators

Rename readNauty() to readNautyGraph() (#55)

Redo erroneous modification of [7c5d8de2eac7] (#55)

Merge

Merge

Bug fix in FullDigraphBase::findArc()

Improvements related to full graphs (#57)

Porting full graphs from svn 3498

- the FullGraph is redesigned in implementation
- some improvemnts in documentation

Small improvements for the nauty reader (#55)

Move the doc of the nauty group to groups.dox (#55)

Swap parameters in readNauty()

Merge

Porting nauty reader function from SVN #3509

Merge

Minor doc improvements related to Suurballe (#47)

Port Suurballe algorithm from svn -r3512

More improvement in the migration script

- Rename (U)GRAPH_TYPEDEFS.
- Rename "directed graph" to "digraph".

Improve the migration script and guide (#166)

- Safer replacement of 'graph' and 'edge'.
- Fix the erroneous renaming of [Gg]raphToEps.
- Fixes and improvements in the migration guide.

Merge

Use standard error/warning message format in the unifier script

Minor doc improvements

Lognormal distribution added (#102)

Fix latex image generation

Merge

Fixes and improvements related to GridGraph

Improvement on grid graphs

- The indexing of matrix is changed according to integer points of the plane.
- The graph type does not depend on the UndirGraphExtender.
- Improving documentation.
- Improved image generation.

Port grid graph structure from SVN 3503 (ticket #57)

Merge

Merge

Merge

Doc improvements in lemon/max_matching.h

Print the failed line numbers in the unifier script (ticket #138)

Small improvements in the unifier script

Several improvements in maximum matching algorithms
- The interface of MaxMatching is changed to be similar to the
weighted algorithms
- The internal data structure (the queue implementation and the
matching map) is changed in the MaxMatching algorithm, which
provides better runtime properties
- The Blossom iterators are changed slightly in the weighted matching
algorithms
- Several documentation improvments
- The test files are merged

Port maximum matching algorithms from svn 3498 (ticket #48)

Better help message and user question in unify-sources.sh

Improved unifier and checker script

- Unify and check modes
- Several file listing modes

Improve the 0.x->1.x converter script (ticket #157)

- Support updating more files at once.
- Much better regexp solution for "whole words only" replacements.

Update NEWS file

Merge

AUTHORS file added

arrert.h is now included by core.h (#161)

Doc improvements

Merge

Updated doxygen options to version 1.5.7.1

Merge

Doc reorganization + improvements

- Reorganize several tools (move them to other modules).
- Add new module for map concepts.
- Remove the doc of all tools in lemon/bits.
- Improvements in groups.dox.
- Fix some doxygen warnings.

Fix several doxygen warnings

Merge

Fix an erroneous const declaration in ArgParser

Repository reorganization

- lemon-0.x-to-1.x.sh moved to tools/ and it installs to $(bindir).
- benchmark/ dir has been removed.

Merge

Changes in LGF related part of the migration guide

Further extension of the migration guide

Improvements in the migration script and guide (ticket #157)

0.x -> 1.x migration script and guide (preliminary version) (#157)

Merge

Fix compilation with Visual Studio 2005.

Merge

Fix several doxygen warings

Revert faulty changes of [dc9e8d2c0df9]

Doxygen 1.5.7.1 somehow needs this to generate the graphs

Fix ignoring Emacs backup/temp files

Merge

Properly detect the Intel C++ compiler (ticket #154).

Fix memory leak hazard

If the constructor throws an exception, it should deallocate each
dynamically allocated memory.

Merge

Change the parameter order in LGF reader and writer tools

Merge

Changing parameter order in exception classes + improvements

Simplifying exceptions

- Using asserts instead of exceptions for unitialized parameters
- Only the IO exceptions are used in the lemon
- DataFormatError is renamed to FormatError
- The IoError is used for file access errors

Use DEBUG instead of ASSERT in graph extenders (ticket #17)

Use proper traits class in visitor based algorithms

Merge

Improvements related to BFS/DFS/Dijkstra (ticket #96)
- Add run(s,t) function to BfsVisit.
- Modify run(s,t) functions in the class interfaces to return bool value.
- Bug fix in Dijkstra::start(t) function.
- Improve Dijkstra::currentDist().
- Extend test files to check named class template parameters.
- Doc improvements.

Remove the BOOST copyright notice from lemon/concept_check.h
as it no longer applies there.

Make chg-len.py independent from the global Mercurial config files

Merge

Using from-to order in graph copying tools + doc improvements (ticket #150)

Merge

Remove todo-s and convert them to trac tickets

Merge

Improve the function-type interface of bfs, dfs, and dijkstra (ticket #96)
- BfsWizard and DfsWizard have run(s), run(s,t), and run() functions,
DijkstraWizard has run(s) and run(s,t) functions.
- Set NodeMap<T> instead of NullMap as PredMap and DistMap in the default
traits classes for the function-type interface.
- Modify the related test files.
- Doc improvements.
- Bug fix in concepts/path.h.

Removing fixme an log assert handler from assertion system

Merge

Merge

Use only a single (cached) variable to hold the version number.

Better versioning (#144)

Python script for computing the longest path in the revision tree

Merge

doc/named-param.dox was missing from doc/Makefile.am

Improvements in named-param.dox (ticket #147)

Improvements in named-param.dox

Port named-param.dox from svn -r3504

Use __func__ only if the compiler supports it (ticket #148).