Various doc improvements (#248)
- Rename all the ugly template parameters (too long and/or starting
with an underscore).
- Rename function parameters starting with an underscore.
- Extend the doc for many classes.
- Use LaTeX-style O(...) expressions only for the complicated ones.
- A lot of small unification changes.
- Small fixes.
- Some other improvements.

 prefix=@prefix@

 exec_prefix=@exec_prefix@

 libdir=@libdir@

 includedir=@includedir@

 Name: @PACKAGE_NAME@

 Description: Library of Efficient Models and Optimization in Networks

 Version: @PACKAGE_VERSION@

 Libs: -L${libdir} -lemon

 Cflags: -I${includedir}