Merge

Rework hypercube graph implementation to be undirected (#57)

Port hypercube digraph structure from SVN 3503 (#57)

Revert to the canonical way of customizing CXXFLAGS

A default list of compiler flags is set via AM_CXXFLAGS Automake variable.
However this gets overridden by per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS in case the foo target). Because of this you should append
$(AM_CXXFLAGS) to the end of the per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS = ... $(AM_CXXFLAGS)).

After this default list of flags the contents of the CXXFLAGS user variable is
passed to the compiler. This variable has a default value determined by
configure (in case of g++ it is '-g -O2'). You can override this by specifying
CXXFLAGS when invoking make (e.g. make CXXFLAGS='-O3').

Merge

Doc improvements for the graph related tools in lemon/bits

Add missing tags and indicators

Rename readNauty() to readNautyGraph() (#55)

Redo erroneous modification of [7c5d8de2eac7] (#55)

Merge

Merge

Bug fix in FullDigraphBase::findArc()

Improvements related to full graphs (#57)

Porting full graphs from svn 3498

- the FullGraph is redesigned in implementation
- some improvemnts in documentation

Small improvements for the nauty reader (#55)

Move the doc of the nauty group to groups.dox (#55)

Swap parameters in readNauty()

Merge

Porting nauty reader function from SVN #3509

Merge

Minor doc improvements related to Suurballe (#47)

Port Suurballe algorithm from svn -r3512

More improvement in the migration script

- Rename (U)GRAPH_TYPEDEFS.
- Rename "directed graph" to "digraph".

Improve the migration script and guide (#166)

- Safer replacement of 'graph' and 'edge'.
- Fix the erroneous renaming of [Gg]raphToEps.
- Fixes and improvements in the migration guide.

Merge

Use standard error/warning message format in the unifier script

Minor doc improvements

Lognormal distribution added (#102)

Fix latex image generation

Merge

Fixes and improvements related to GridGraph

Improvement on grid graphs

- The indexing of matrix is changed according to integer points of the plane.
- The graph type does not depend on the UndirGraphExtender.
- Improving documentation.
- Improved image generation.

Port grid graph structure from SVN 3503 (ticket #57)

Merge

Merge

Merge

Doc improvements in lemon/max_matching.h

Print the failed line numbers in the unifier script (ticket #138)

Small improvements in the unifier script

Several improvements in maximum matching algorithms
- The interface of MaxMatching is changed to be similar to the
weighted algorithms
- The internal data structure (the queue implementation and the
matching map) is changed in the MaxMatching algorithm, which
provides better runtime properties
- The Blossom iterators are changed slightly in the weighted matching
algorithms
- Several documentation improvments
- The test files are merged

Port maximum matching algorithms from svn 3498 (ticket #48)

Better help message and user question in unify-sources.sh

Improved unifier and checker script

- Unify and check modes
- Several file listing modes

Improve the 0.x->1.x converter script (ticket #157)

- Support updating more files at once.
- Much better regexp solution for "whole words only" replacements.

Update NEWS file

Merge

AUTHORS file added

arrert.h is now included by core.h (#161)

Doc improvements

Merge

Updated doxygen options to version 1.5.7.1

Merge

Doc reorganization + improvements

- Reorganize several tools (move them to other modules).
- Add new module for map concepts.
- Remove the doc of all tools in lemon/bits.
- Improvements in groups.dox.
- Fix some doxygen warnings.

Fix several doxygen warnings

Merge

Fix an erroneous const declaration in ArgParser

Repository reorganization

- lemon-0.x-to-1.x.sh moved to tools/ and it installs to $(bindir).
- benchmark/ dir has been removed.

Merge

Changes in LGF related part of the migration guide

Further extension of the migration guide

Improvements in the migration script and guide (ticket #157)

0.x -> 1.x migration script and guide (preliminary version) (#157)

Merge

Fix compilation with Visual Studio 2005.

Merge

Fix several doxygen warings

Revert faulty changes of [dc9e8d2c0df9]

Doxygen 1.5.7.1 somehow needs this to generate the graphs

Fix ignoring Emacs backup/temp files

Merge

Properly detect the Intel C++ compiler (ticket #154).

Fix memory leak hazard

If the constructor throws an exception, it should deallocate each
dynamically allocated memory.

Merge

Change the parameter order in LGF reader and writer tools

Merge

Changing parameter order in exception classes + improvements

Simplifying exceptions

- Using asserts instead of exceptions for unitialized parameters
- Only the IO exceptions are used in the lemon
- DataFormatError is renamed to FormatError
- The IoError is used for file access errors

Use DEBUG instead of ASSERT in graph extenders (ticket #17)

Use proper traits class in visitor based algorithms

Merge

Improvements related to BFS/DFS/Dijkstra (ticket #96)
- Add run(s,t) function to BfsVisit.
- Modify run(s,t) functions in the class interfaces to return bool value.
- Bug fix in Dijkstra::start(t) function.
- Improve Dijkstra::currentDist().
- Extend test files to check named class template parameters.
- Doc improvements.

Remove the BOOST copyright notice from lemon/concept_check.h
as it no longer applies there.

Make chg-len.py independent from the global Mercurial config files

Merge

Using from-to order in graph copying tools + doc improvements (ticket #150)

Merge

Remove todo-s and convert them to trac tickets

Merge

Improve the function-type interface of bfs, dfs, and dijkstra (ticket #96)
- BfsWizard and DfsWizard have run(s), run(s,t), and run() functions,
DijkstraWizard has run(s) and run(s,t) functions.
- Set NodeMap<T> instead of NullMap as PredMap and DistMap in the default
traits classes for the function-type interface.
- Modify the related test files.
- Doc improvements.
- Bug fix in concepts/path.h.

Removing fixme an log assert handler from assertion system

Merge

Merge

Use only a single (cached) variable to hold the version number.

Better versioning (#144)

Python script for computing the longest path in the revision tree

Merge

doc/named-param.dox was missing from doc/Makefile.am

Improvements in named-param.dox (ticket #147)

Improvements in named-param.dox

Port named-param.dox from svn -r3504

Use __func__ only if the compiler supports it (ticket #148).

Merge

Merge

Make copy constr and op= of the default maps private (ticket #137)

Update NEWS file (ticket #121)

Use standard #ifndef/#define for avoiding multiple include.

Merge

Disable checks for ILP solvers.

Merge

Rename Def* to Set* in Bfs, Dfs, Dijkstra (ticket #134)
- DefXyzMap --> SetXyzMap
- DefHeap --> SetHeap
- DefStandardHeap --> SetStandardHeap
- DefOperationTraits --> SetOperationTraits
- DefProcessedMapToBeDefaultMap --> SetStandardProcessedMap
- Bug fix: SetStandardProcessedMap shouldn't be template

Bug fix + doc improvement in UndirDigraphExtender (ticket #141)

Merge

Merge

Rename BoundingBox to Box (ticket #126)

Doc improvement for visitor classes (ticket #134)

Fix processedMap() named parameter for dijkstra() (ticket #140)

Stream operators for Point and BoundingBox classes (ticket #126)
- Add operator<< and operator>> for BoundingBox.
- operator<< of Point gives space-less output.

Ignore the downloaded tag files

Section writer class

Merge

Update README file.

Update INSTALL file.

Many improvements in bfs.h, dfs.h and dijkstra.h
- Add run() function to Bfs and run(s,t) function to DfsVisit.
- Add debug checking to addSource() function of Dfs and DfsVisit.
- Add a few missing named parameters (according to \todo notes).
- Small fixes in the code (e.g. missing derivations).
- Many doc improvements.
- Remove \todo and \warning comments which are no longer valid.
- Remove \author commands (see ticket #39).
- Fixes in the the doc (e.g. wrong references).
- Hide the doc of most of the private and protected members.
- Use public typedefs instead of template parameters in public functions.
- Use better parameter names for some functions.
- Other small changes to make the doc more uniform.

Merge

Improve test/dim_test.cc

Improvements in dim2::BoundingBox (ticket #126)
- Rename the private varibles to start with underscore.
- Doc improvements.

Merge

Merge

Converting INVALID arc to INVALID edge

Fixing constness of Graph in GraphWriter

Unify the spelling of LEMON (#103).

Correcting changeSource interface and documentation

- The changeSource() and changeTarget() is renamed to changeU() and
changeV() in undirected graphs
- The changeSource(a, n) and changeTarget(a, n) is removed from
undirected graphs
- Correcting invalidating iterators in documentation

Erase in the documentation of list graphs

Unify DynArcLookUp interface (ticket #127)

Two bug fixes in DynArcLookUp

Merge

Fix ImmediateDetach in AlterationObserver (ticket #130)

Doc improvement in core.h (ticket #97)

Reworking graph testing

- The graph tests check more graph functionality.
- The petersen graph is too regular, therefore special graphs are used.
- The graph_test.h contains just general tools to test graphs.

Include CMake related files in the tarball.

Merge

CMake improvements.
- documentation generation with Doxygen
- installation support

Quote path names.

Fix compilation error when NDEBUG is defined.

Fixing bfs test (Ticket #128)

Merge

Reorganize header files (Ticket #97)

In addition on some places the DefaultMap<G, K, V> is replaced with
ItemSetTraits<G, K>::template Map<V>::Type, to decrease the dependencies
of different tools. It is obviously better solution.

Turn off treeview in the doc.

make now recognises if Doxygen.in has updated. (Thanks to Akos)

Bug fix in assert.h (ticket #125)

Merge

Doc improvement for kruskal() (ticket #114)

Merge

Some cleanup in ArgParser API (ticket #116)

Merge

Fix the incorrect tab replacements of unify-sources.sh

Small fixes in graph_to_eps_demo.cc

Remove long lines (from all but one file)

Apply unify-sources.sh to the source tree

Better source unifier

- now it is called scripts/unify-sources.sh
- replaces each tab with 8 spaces
- remove trailing spaces (and tabs)
- warnings on long lines (i.e. on lines that are more than 80 characters)
- the standard file header now turns off the space-to-tab replacement in Emacs

Merge

Improvements related to graphToEps()

Merge

Doc improvements related to ArgParser

Cleaning of heap test and bug fix in heap concept check (ticket #100)

* The dijkstra heap test's digraph is inlined into the source file
* The random sequences are fixed
* The content of the header is moved to the source file
* Only the binary heap is checked

Merge

More docs for undirected LGF IO

Porting graph_copy_test.cc from SVN 3498

Bug fix in GraphCopy (ticket #117)

Merge

Set inline functions in header files (ticket #115)

Merge

Add lgf_writer.h to Makefile.am (ticket #112)

Doc improvements for kruskal()

Merge

Doc improvements in LGF related files

lgf_demo.cc is merged with reader_writer_demo.cc (from SVN -r3501)

Move to private copy constrcutors

Section readers moved to distinct class

New skip*() functions in (Dig|G)raphReader

Fix bug caused by m4 consuming pairs of square brackets (#108).

Improvments in map name handling

- The label map is not necessary
- If the item set is empty and no map is read, then the map name line can
be ommited

Fix skip*() functions is GraphWriters (Ticket #107)

Fix gcc-4.3 compilation errors and warnings

Merge

*Maps() -> *MapNames() in LgfContents

Doc improvements in LgfContents

Remove LgfContents.is*()

Content -> contents

Doc improvements in random.h

Seeding from file source or from pid and time (ticket #19)

Merge

Reworked versioning.

Merge

LGF content reader class

Clarifying the usage of skipSection

Improve and redesign test programs + unify their output (ticket #25)
- Move graph related utilities form test_tools.h to graph_test.h.
- Move the contents of graph_utils_test.h to graph_utils_test.cc.
- Rename map_test.h -> graph_maps_test.h.
- Rename digraph_test.h -> graph_test.h.
- Many improvements in the following files:
* digraph_test.cc
* graph_test.cc
* graph_test.h
* graph_maps_test.h
* graph_utils_test.cc
* bfs_test.cc
* dfs_test.cc
* counter_test.cc
- Test programs print messages only if it really seems necessary.
- Remove \file commands form .cc test files.

Port dijkstra_test.cc from SVN -r3499

Fix various rename bugs

Remove reset() functions from SubCounter classes (ticket #82)

Rename StoreBoolMap to LoggerBoolMap (ticket #34).

lemon/concept_check.h was installed into a wrong directory

Undirected LGF IO

Reworking demo file

Bug fixes and improvements in LGF IO

Section reader for DigraphReader

Merge

Improved documentation for counters

Change the implementation of StoreBoolMap + improve doc (ticket #36)

Wrong member variable settings bug fix. (Ticket #95)

Using \tparam commands + removing \author commands (ticket #29, #39)

More flexible header names in .lgf + largely improved doc

Update .hgignore

Merge

Convert the EPS files to PNG when generating the documentation

Node shape images added to graph_to_eps doc

Turn on built in Doxygen STL support

Updated Doxyfile.in (using 'doxygen -u -s')

Item validity checking for ListGraph and SmartGraph

Revert 356930927a71 and add TEMPLATE_GRAPH_TYPEDEFS instead (ticket #89)

Fix missing semicolon in GRAPH_TYPEDEFS (ticket #89)

Makefile cleanup (see ticket #87)

Merge

MSVC 2005 compatible path structure (ticket #87)

Resolve several MSVC related compilation problems