Merge bugfix #173

Merge

Bugfix in Random (#173)

- operator()s always return a double now
- the faulty real<Num>(Num) and real<Num>(Num,Num) have been removed

chg-len.py uses the Mercurial API directly

This makes chg-len.py much faster.

Merge bugfix #171 (see also #172)

Merge

Extend test cases for graphs and digraphs (#172)

Bug fix in SmartGraph::restoreSnapshot() (#171)

Avoid bit operator precedence warning with gcc-4.3

Some of these warnings are actually revealed real bugs

Merge

Merge bugfix #170

Critical bug fix in SmartDigraph::split() #170

Merge

Add missing tags and functions for item counting in SmartGraph (#3)

Hide "used files" on the doc pages

Merge

Rework hypercube graph implementation to be undirected (#57)

Port hypercube digraph structure from SVN 3503 (#57)

Revert to the canonical way of customizing CXXFLAGS

A default list of compiler flags is set via AM_CXXFLAGS Automake variable.
However this gets overridden by per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS in case the foo target). Because of this you should append
$(AM_CXXFLAGS) to the end of the per-target CXXFLAGS variables (e.g.
foo_CXXFLAGS = ... $(AM_CXXFLAGS)).

After this default list of flags the contents of the CXXFLAGS user variable is
passed to the compiler. This variable has a default value determined by
configure (in case of g++ it is '-g -O2'). You can override this by specifying
CXXFLAGS when invoking make (e.g. make CXXFLAGS='-O3').

Merge

Doc improvements for the graph related tools in lemon/bits

Add missing tags and indicators

Rename readNauty() to readNautyGraph() (#55)

Redo erroneous modification of [7c5d8de2eac7] (#55)

Merge

Merge

Bug fix in FullDigraphBase::findArc()

Improvements related to full graphs (#57)

Porting full graphs from svn 3498

- the FullGraph is redesigned in implementation
- some improvemnts in documentation

Small improvements for the nauty reader (#55)

Move the doc of the nauty group to groups.dox (#55)

Swap parameters in readNauty()

Merge

Porting nauty reader function from SVN #3509

Merge

Minor doc improvements related to Suurballe (#47)

Port Suurballe algorithm from svn -r3512

More improvement in the migration script

- Rename (U)GRAPH_TYPEDEFS.
- Rename "directed graph" to "digraph".

Improve the migration script and guide (#166)

- Safer replacement of 'graph' and 'edge'.
- Fix the erroneous renaming of [Gg]raphToEps.
- Fixes and improvements in the migration guide.

Merge

Use standard error/warning message format in the unifier script

Minor doc improvements

Lognormal distribution added (#102)

Fix latex image generation

Merge

Fixes and improvements related to GridGraph

Improvement on grid graphs

- The indexing of matrix is changed according to integer points of the plane.
- The graph type does not depend on the UndirGraphExtender.
- Improving documentation.
- Improved image generation.

Port grid graph structure from SVN 3503 (ticket #57)

Merge

Merge

Merge

Doc improvements in lemon/max_matching.h

Print the failed line numbers in the unifier script (ticket #138)

Small improvements in the unifier script

Several improvements in maximum matching algorithms
- The interface of MaxMatching is changed to be similar to the
weighted algorithms
- The internal data structure (the queue implementation and the
matching map) is changed in the MaxMatching algorithm, which
provides better runtime properties
- The Blossom iterators are changed slightly in the weighted matching
algorithms
- Several documentation improvments
- The test files are merged

Port maximum matching algorithms from svn 3498 (ticket #48)

Better help message and user question in unify-sources.sh

Improved unifier and checker script

- Unify and check modes
- Several file listing modes

Improve the 0.x->1.x converter script (ticket #157)

- Support updating more files at once.
- Much better regexp solution for "whole words only" replacements.

LEMON 1.0 released (58f1a3144134 tagged as r1.0)