Merge #341, #360, #51, #359 to branch 1.2

Update NEWS file

Trim the documentation (#359)

Merge backout of a6eb9698c321 (#360,#51)

Small doc fixes and improvements (#359)

Backed out changeset a6eb9698c321 (#360, #51)

Release branch 1.2 created

Unify the sources (#339)

Fix multiple executions in matchings (fract. mathcings) (#356)

Merge #356

Merge #314

Minor doc fix related to #348

Uniforming primal scale to 2 (#314)

Fix documentation issues (#314)

Fractional matching initialization of weighted matchings (#314)

Add fractional matching algorithms (#314)

General improvements in weighted matching algorithms (#314)

- Fix include guard
- Uniform handling of MATCHED and UNMATCHED blossoms
- Prefer operations which decrease the number of trees
- Fix improper use of '/='

The solved problems did not cause wrong solution.

Merge bugfix #356 to branch 1.1

Fix multiple execution bug in weighted matchings (#356)

This chgset also redoes the fix of [28c7ad6f8d91] and its backpont to 1.1,
[268a052c3043].

Add doc/references.dox to .hgignore

Replace figure at matching doc #348

The original bibartite_matching.eps is kept for future use.

Rename min mean cycle classes and their members (#179)
with respect to the possible introduction of min ratio
cycle algorithms in the future.

The renamed classes:
- Karp --> KarpMmc
- HartmannOrlin --> HartmannOrlinMmc
- Howard --> HowardMmc

The renamed members:
- cycleLength() --> cycleCost()
- cycleArcNum() --> cycleSize()
- findMinMean() --> findCycleMean()
- Value --> Cost
- LargeValue --> LargeCost
- SetLargeValue --> SetLargeCost

Fix gcc 3.3 compilation error (#354)

gcc 3.3 requires that a class has a default constructor if it has
template named parameters. (That constructor can be protected.)

LEMON 1.1.2 released (86a880ba752d tagged as r1.1.2)

Update NEWS file

LEMON 1.0.5 released (50b6b66daafd tagged as r1.0.5)

Update NEWS file

Clarify type names in NetworkSimplex (#353)

This patch clarifies the misleading effects of the renamings
in [f3bc4e9b5f3a].

Merge #306

Add tolerance() functions for HaoOrlin (#306)

Merge #301

Also test fullInit() in suurballe_test (#181, #323)

Add traits class + named parameters to Suurballe (#323)

The following types can be modified using named parameters:
- FlowMap
- PotentialMap
- Path
- Heap + HeapCrossRef

Merge #181, #323

Rename heap structures (#301)

- KaryHeap --> DHeap
- FouraryHeap --> QuadHeap
- BinomHeap --> BinomialHeap

Merge bugfixes #323 to branch 1.1

Add a fullInit() function to Suurballe (#181, #323)
to provide faster handling of multiple targets.
A start() function is also added, just for the sake of
convenience.

Rework and improve Suurballe (#323)

- Improve the implementation: use a specific, faster variant of
residual Dijkstra for the first search.
- Some reorganizatiopn to make the code simpler.
- Small doc improvements.

Remove unnecessary integer requirement in Suurballe (#323)

Bug fix in Suurballe (#323)

Configurable glpk prefix in ./scripts/bootstrap.sh and ...
unneeded solver backends are explicitely switched off with --without-*

Merge #342

Improve README and mainpage.dox (#342)

Merge #347

Use 'long long' flow cost in dimacs-solver.cc (#347)

Merge

Support tolerance technique for BellmanFord (#51)

A new operation traits class BellmanFordToleranceOperationTraits
is introduced, which uses the tolerance technique in its less()
function. This class can be used with the SetOperationTraits
named template parameter.

Merge #332

ArgParser can throw exception instead of exit(1) (#332)

Better return type for cycleLength() functions (#179)
in the min mean cycle algorithms.

The original Value type is used instead of the LargeValue type,
which is introduced for internal computations.

Merge 4 backouts (#50, #312)

Back out 4 changesets (#50, #312)
- 532697c9fa53
- bb8c4cd57900
- 9f529abcaebf
- 703ebf476a1d

Merge #340

New heuristics for MCF algorithms (#340)
and some implementation improvements.

- A useful heuristic is added to NetworkSimplex to make the
initial pivots faster.
- A powerful global update heuristic is added to CostScaling
and the implementation is reworked with various improvements.
- Better relabeling in CostScaling to improve numerical stability
and make the code faster.
- A small improvement is made in CapacityScaling for better
delta computation.
- Add notes to the classes about the usage of vector<char> instead
of vector<bool> for efficiency reasons.

Merge bugfix #336

Merge bugfix #336 to branch 1.1

Merge bugfix #336 to branch 1.0

Fix the date field comment of graphToEps() output (#336)

Modify the header of scripts/bib2dox.py (#184)

Merge

Fix LpBase::addRow(Constr) (#334)

Merge bugfix #337

Merge bugfix #337 to branch 1.1

Use void* like LPX object (#337)

Merge

Handle graph changes in the MCF algorithms (#327)

The reset() functions are renamed to resetParams() and the new reset()
functions handle the graph chnages, as well.

Merge

Doc improvements for planarity related tools (#62)

Port planar image from SVN -r3524 (#62)

Fix clear() function in ExtendFindEnum (#335), backport of [28c7ad6f8d91]

Fix clear() function in ExtendFindEnum (#335), backport of [28c7ad6f8d91]

Merge

Add doc for the traits class parameters (#315)

Add more information on Makefile variables (#316)

Add a warning about huge capacities in Preflow (#319)

Merge #180 and a bugfix in #51

Small bug fixes (#180)

Rename a private type in MCF classes (#180)

The new MCF algorithms define a private map type VectorMap,
which could be misleading, since there is an other VectorMap
defined in lemon/bits/vector_map.h. Thus the new type is
is renamed to StaticVectorMap.

Adds tests for the new MCF algorithms (#180)

Rework the MCF test file to help extending it (#180)

Fixes in the heap concept to avoid warnings (#180)

Add citations to CycleCanceling (#180, #184)

Entirely rework cycle canceling algorithms (#180)

- Move the cycle canceling algorithms (CycleCanceling, CancelAndTighten)
into one class (CycleCanceling).
- Add a Method parameter to the run() function to be able to select
the used cycle canceling method.
- Use the new interface similarly to NetworkSimplex.
- Rework the implementations using an efficient internal structure
for handling the residual network.
This improvement made the codes much faster.
- Handle GEQ supply type (LEQ is not supported).
- Handle infinite upper bounds.
- Handle negative costs (for arcs of finite upper bound).
- Extend the documentation.

Port cycle canceling algorithms from SVN -r3524 (#180)

Add citations to the scaling MCF algorithms (#180, #184)
and improve the doc of their group.

Small doc improvements + unifications in MCF classes (#180)

Small implementation improvements in MCF algorithms (#180)

- Handle max() as infinite value (not only infinity()).
- Better GEQ handling in CapacityScaling.
- Skip the unnecessary saturating operations in the first phase in
CapacityScaling.
- Use vector<char> instead of vector<bool> and vector<int> if it is
possible and it proved to be usually faster.

More options for run() in scaling MCF algorithms (#180)

- Three methods can be selected and the scaling factor can be
given for CostScaling.
- The scaling factor can be given for CapacityScaling.

Entirely rework CostScaling (#180)

- Use the new interface similarly to NetworkSimplex.
- Rework the implementation using an efficient internal structure
for handling the residual network. This improvement made the
code much faster.
- Handle GEQ supply type (LEQ is not supported).
- Handle infinite upper bounds.
- Handle negative costs (for arcs of finite upper bound).
- Traits class + named parameter for the LargeCost type used in
internal computations.
- Extend the documentation.

Port CostScaling from SVN -r3524 (#180)

Traits class + a named parameter for CapacityScaling (#180)
to specify the heap used in internal Dijkstra computations.

Entirely rework CapacityScaling (#180)

- Use the new interface similarly to NetworkSimplex.
- Rework the implementation using an efficient internal structure
for handling the residual network. This improvement made the
code much faster (up to 2-5 times faster on large graphs).
- Handle GEQ supply type (LEQ is not supported).
- Handle negative costs for arcs of finite capacity.
(Note that this algorithm cannot handle arcs of negative cost
and infinite upper bound, thus it returns UNBOUNDED if such
an arc exists.)
- Extend the documentation.

Port CapacityScaling from SVN -r3524 (#180)

Memory leak bugfix in BellmanFord (#51)

Merge bugfix #330

Merge bugfix #330 to branch 1.1

Merge

Merge bugfix #330 to branch 1.0

Bug fix in map_extender.h (#330)

Fix clear() function in ExtendFindEnum (#335)

Merge #62

Planarity checking function instead of class (#62)

Port planarity related algorithms from SVN 3509 (#62)

Merge

Fix in HartmannOrlin algorithm (#333)

Merge fix #321

Merge bugfix #322

Merge bugfix in #250

Merge #317

LEMON 1.1.1 released (78b7231f0b2e tagged as r1.1.1)

Update NEWS file

Merge bugfix #307

Merge bugfix #311

Merge bugfix #302

Merge bugfix #302

Merge several CMAKE related improvements

Merge fix #295

LEMON 1.1 released (06f816565bef tagged as r1.1)

Merge various fixes

Merge

Remove references of missing tools (#257)

Release branch 1.1 created

Valgring option for ./scripts/bootstrap.sh

Optionally use valgrind when running tests + other build system fixes

Merge

Merge

Fix gcc-4.4 compilation warning

Map utility functions (#320)

Merge

Various doc improvements (#331)

- Add notes to the graph classes about the time of
item counting.
- Clarify the doc for run() in BFS and DFS.
- Other improvements.

Small doc fixes in several files (#331)

Doc improvements for Path and PathDumper concepts (#331)

Merge #321

Merge #293

Merge

Small fixes related to BellmanFord (#51)

- Add a missing #include.
- Add a missing const keyword for negativeCycle().
- Test if negativeCycle() is const function.

Merge #68 (Port static graph implementation)

Merge

Make some graph member functions static (#311, #68)

Add a new build() function to StaticDigraph (#68)

This function builds the digraph from an arc list that
contains pairs of integer indices from the range [0..n-1].
It is useful in the cases when you would like to build a
StaticDigraph from scratch, i.e. you do not want to build
another digraph that can be copied using the other build()
function.

Extend the interface of StaticDigraph (#68)
with index(), arc() and node() functions similarly to
other static graph structures.

Add documentation for StaticDigraph (#68)

Small improvements + add tests for StaticDigraph (#68)

Port StaticDigraph from SVN -r3524 (#68)

Small fix in the doc (#179)

Add citations to the min mean cycle classes (#179, #184)

Merge #179 (Port the min mean cycle algorithms)

Add tolerance() functions for MMC classes (#179)

Separate group for the min mean cycle classes (#179)

Simplify comparisons in min mean cycle classes (#179)
using extreme INF values instead of bool flags.

Add HartmannOrlin algorithm class (#179)
This algorithm is an improved version of Karp's original method,
it applies an efficient early termination scheme.
The interface is the same as Karp's and Howard's interface.

Add Karp algorithm class (#179)
based on the MinMeanCycle implementation in SVN -r3436.
The interface is reworked to be the same as Howard's interface.

Rename MinMeanCycle to Howard (#179)

Add a detailed test file for MinMeanCycle and fix test_tools.h (#179)

Rename cyclePath() to cycle() in MinMeanCycle (#179)

Traits class + named parameters for MinMeanCycle (#179)

- Add a Traits class defining LargeValue, Tolerance, Path types.
LargeValue is used for internal computations, it is 'long long'
if the length type is integer, otherwise it is 'double'.
- Add named template parameters for LargeValue and Path types.
- Improve numerical stability: remove divisions from the internal
computations. If the arc lengths are integers, then all used
values are integers (except for the cycleMean() query function,
of course).

Rework and fix the implementation of MinMeanCycle (#179)

- Fix the handling of the cycle means.
- Many implementation improvements:
- More efficient data storage for the strongly connected
components.
- Better handling of BFS queues.
- Merge consecutive BFS searches (perform two BFS searches
instead of three).

This version is about two times faster on average and an order of
magnitude faster if there are a lot of strongly connected components.

Simplify the interface of MinMeanCycle (#179)
Remove init() and reset(), and move their content into findMinMean().

Port MinMeanCycle from SVN -r3524 (#179)
with some doc improvements

Merge #184

Update Doxygen configuration file

Insert citations into the doc (#184)

- Add general citations to modules.
- Add specific citations for max flow and min cost flow algorithms.
- Add citations for the supported LP and MIP solvers.
- Extend the main page.
- Replace inproceedings entries with the journal versions.
- Add a new bibtex entry about network simplex.
- Remove unwanted entries.

Handle url fields in bib2dox.py (#184)
and modify the bibtex file using url fields.

Merge bugfix #322

Distribute LEMONConfig.cmake.in (#322)

Merge bugfix in #250

Merge #317

Remove unnecessary OsiCbc dependency (#317)

Fix (and improve) error message in mip_test.cc (#317)

Add soplex support to scripts/bootstrap.sh plus...
it checks whether cbc and soplex are installed at the given prefix.

Faster add row operation (#203)

One virtual function call instead of more

Improve bib2dox.py using \section for entiries (#184)

Integrate bib2dox.py into the build environments (#184)

Add bib->dox converter and initial references.bib (#184)

Merge #311

Merge

Add a warning for List(Di)Graph::Snapshot (#311)
and extend tests for snapshots

Modify the implementation of ListDigraph::ArcIt (#311)

The new implementation is based on out-arc iteration (like
ListGraph::ArcIt) instead of in-arc iteration to make it
consistent with the documentation.

Much better implementation for node splitting (#311)
in ListDigraph. This solution is the same as the one that
is used in SmartDigraph. It is much faster and does not
invalidate any iterator like the former implementation.

Add a resize() function to HypercubeGraph (#311)
just like the similar functions in other static graph structures,
and extend the test files to check these functions.

Add reserve functions to ListGraph and SmartGraph (#311)
ListDigraph and SmartDigraph already have such functions.

Doc improvements, fixes and unifications for graphs (#311)

Doc improvements and unification for graph concepts (#311)

Copyright notices added to scripts

Simple interactive bootstrap script

Merge #298

Merge

Small improvements for NetworkSimplex (#298)

Add a parameter to control arc mixing in NS (#298)

Small improvements in NS pivot rules (#298)

Merge #302

Add creator functions for IdMap and RangeIdMap (#302)

Rename ValueIterator to ValueIt in graph maps (#302)
but keep ValueIterator as an alias in CrossRefMap
(only for reverse compatibility).

Extend maps_test.cc (#302)

Doc improvements for several graph maps (#302)

Merge

Improvements for graph maps (#302)

- Add a count() function to CrossRefMap.
- Add tests for IdMap and RangeIdMap.
- Extend tests for CrossRefMap.
- Improve the doc.

Merge

Also check ReferenceMapTag in concept checks (#312)

Merge

Small doc improvements (#304)

Merge

Rearrange modules (#303)

Small doc improvements

Merge

Unify member names in heaps (#299)

The following renamings are made.

Public members:
- UnderFlowPriorityError -> PriorityUnderflowError
("underflow" is only one word)

Private members:
- bubble_up() -> bubbleUp()
- bubble_down() -> bubbleDown()
- second_child() -> secondChild()
- makeroot() -> makeRoot()
- relocate_last() -> relocateLast()
- data -> _data
- boxes -> _boxes

Move the heaps to a separate group (#299)

Improve and unify the documentation of heaps (#299)
and avoid a warning in SimpleBucketHeap::operator[].

Merge

Much faster implementation for BinomHeap (#301)

Smarter bubbleDown() in K-ary heaps (#301)

Small improvements in heap implementations (#301)

Make K a template parameter in KaryHeap (#301)

Improve and unify the doc + names in the new heaps (#301)

Bug fix in PairingHeap::pop() (#301)

Add fourary, k-ary, pairing and binomial heaps (#301)
These structures were implemented by Dorian Batha.

Merge

Add negativeCycle() function to BellmanFord (#51)

Add a detailed test file for BellmanFord (#51)

Improvements and unifications for BellmanFord (#51)

- Rework the function type interface to fit to dijkstra().
- Rename named template parameters (Def* -> Set*).
- Rename some private member variables
(to start with an underscore).
- Simplify template parameter names.
- Many unifications and improvements in the doc.

Port Bellman-Ford algorithm from SVN -r3524 (#51)

Merge

Improvements for iterable maps (#73)

Port iterable maps from SVN 3509 (#73)