- Increased max. number of iteration
- Better tests.
5 \page graph-io-page Graph Input-Output
7 The standard graph IO enables one to store graphs and additional maps
8 (i.e. functions on the nodes or edges) in a flexible and efficient way.
9 Before you read this page you should be familiar with LEMON
10 \ref graphs "graphs" and \ref maps-page "maps".
12 \section format The general file format
14 The file contains sections in the following order:
22 Some of these sections can be omitted, but you will basicly need the nodeset
23 section (unless your graph has no nodes at all) and the edgeset section
24 (unless your graph has no edges at all).
26 The nodeset section describes the nodes of your graph: it identifies the nodes
27 and gives the maps defined on them, if any. It starts with the
32 The next line contains the names of the nodemaps, separated by whitespaces. Each
33 following line describes a node in the graph: it contains the values of the
34 maps in the right order. The map named "label" should contain unique values
35 because it is regarded as a label map. These labels need not be numbers but they
36 must identify the nodes uniquely for later reference. For example:
40 label x-coord y-coord color
46 The edgeset section is very similar to the nodeset section, it has
47 the same coloumn oriented structure. It starts with the line
51 The next line contains the whitespace separated list of names of the edge
52 maps. Each of the next lines describes one edge. The first two elements in
53 the line are the labels of the source and target (or tail and head) nodes of the
54 edge as they occur in the label node map of the nodeset section. You can also
55 have an optional label map on the edges for later reference (which has to be
66 The \e nodes section contains <em>labeled (distinguished) nodes</em>
67 (i.e. nodes having a special
68 label on them). The section starts with
72 Each of the next lines contains a label for a node in the graph
73 and then the label as described in the \e nodeset section.
81 The last section describes the <em>labeled (distinguished) edges</em>
82 (i.e. edges having a special label on them). It starts with \c \@edges
83 and then each line contains the name of the edge and the label.
91 The file may contain empty lines and comment lines. The comment lines
92 start with an \c # character.
94 The attributes section can handle some information about the graph. It
95 contains key-value pairs in each line (a key and the mapped value to key). The
96 key should be a string without whitespaces, the value can be of various types.
100 title "Four colored planar graph"
101 author "Balazs DEZSO"
102 copyright "Lemon Library"
106 Finally, the file should be closed with \c \@end line.
109 \section use Using graph input-output
112 The graph input and output is based on <em> reading and writing
113 commands</em>. The user gives reading and writing commands to the reader or
114 writer class, then he calls the \c run() method that executes all the given
117 \subsection write Writing a graph
119 The \ref lemon::GraphWriter "GraphWriter" template class
120 provides the graph output. To write a graph
121 you should first give writing commands to the writer. You can declare
122 writing command as \c NodeMap or \c EdgeMap writing and labeled Node and
126 GraphWriter<ListGraph> writer(std::cout, graph);
129 The \ref lemon::GraphWriter::writeNodeMap() "writeNodeMap()"
130 function declares a \c NodeMap writing command in the
131 \ref lemon::GraphWriter "GraphWriter".
132 You should give a name to the map and the map
133 object as parameters. The NodeMap writing command with name "label" should write a
134 unique map because it will be regarded as a label map.
136 \see IdMap, DescriptorMap
139 IdMap<ListGraph, Node> nodeLabelMap;
140 writer.writeNodeMap("label", nodeLabelMap);
142 writer.writeNodeMap("x-coord", xCoordMap);
143 writer.writeNodeMap("y-coord", yCoordMap);
144 writer.writeNodeMap("color", colorMap);
147 With the \ref lemon::GraphWriter::writeEdgeMap() "writeEdgeMap()"
148 member function you can give an edge map
149 writing command similar to the NodeMaps.
151 \see IdMap, DescriptorMap
154 DescriptorMap<ListGraph, Edge, ListGraph::EdgeMap<int> > edgeDescMap(graph);
155 writer.writeEdgeMap("descriptor", edgeDescMap);
157 writer.writeEdgeMap("weight", weightMap);
158 writer.writeEdgeMap("note", noteMap);
161 With \ref lemon::GraphWriter::writeNode() "writeNode()"
162 and \ref lemon::GraphWriter::writeEdge() "writeEdge()"
163 functions you can designate Nodes and
164 Edges in the graph. For example, you can write out the source and target node
165 of a maximum flow instance.
168 writer.writeNode("source", sourceNode);
169 writer.writeNode("target", targetNode);
171 writer.writeEdge("observed", edge);
174 With \ref lemon::GraphWriter::writeAttribute() "writeAttribute()"
175 function you can write an attribute to the file.
178 writer.writeAttribute("author", "Balazs DEZSO");
179 writer.writeAttribute("version", 12);
182 After you give all write commands you must call the
183 \ref lemon::GraphWriter::run() "run()" member
184 function, which executes all the writing commands.
190 \subsection reading Reading a graph
192 The file to be read may contain several maps and labeled nodes or edges.
193 If you read a graph you need not read all the maps and items just those
194 that you need. The interface of the \ref lemon::GraphReader "GraphReader"
196 the \ref lemon::GraphWriter "GraphWriter"
197 but the reading method does not depend on the order of the
200 The reader object assumes that each not readed value does not contain
201 whitespaces, therefore it has some extra possibilities to control how
202 it should skip the values when the string representation contains spaces.
205 GraphReader<ListGraph> reader(std::cin, graph);
208 The \ref lemon::GraphReader::readNodeMap() "readNodeMap()"
209 function reads a map from the \c nodeset section.
210 If there is a map that you do not want to read from the file and there are
211 whitespaces in the string represenation of the values then you should
212 call the \ref lemon::GraphReader::skipNodeMap() "skipNodeMap()"
213 template member function with proper parameters.
215 \see QuotedStringReader
218 reader.readNodeMap("x-coord", xCoordMap);
219 reader.readNodeMap("y-coord", yCoordMap);
221 reader.readNodeMap<QuotedStringReader>("label", labelMap);
222 reader.skipNodeMap<QuotedStringReader>("description");
224 reader.readNodeMap("color", colorMap);
227 With the \ref lemon::GraphReader::readEdgeMap() "readEdgeMap()"
228 member function you can give an edge map
229 reading command similar to the NodeMaps.
232 reader.readEdgeMap("weight", weightMap);
233 reader.readEdgeMap("label", labelMap);
236 With \ref lemon::GraphReader::readNode() "readNode()"
237 and \ref lemon::GraphReader::readEdge() "readEdge()"
238 functions you can read labeled Nodes and
242 reader.readNode("source", sourceNode);
243 reader.readNode("target", targetNode);
245 reader.readEdge("observed", edge);
248 With \ref lemon::GraphReader::readAttribute() "readAttribute()"
249 function you can read an attribute from the file.
253 writer.readAttribute("author", author);
255 writer.writeAttribute("version", version);
258 After you give all read commands you must call the
259 \ref lemon::GraphReader::run() "run()" member
260 function, which executes all the commands.
267 \section types Background of Reading and Writing
270 To read a map (on the nodes or edges)
271 the \ref lemon::GraphReader "GraphReader"
272 should know how to read a Value from the given map.
273 By the default implementation the input operator reads a value from
274 the stream and the type of the readed value is the value type of the given map.
275 When the reader should skip a value in the stream, because you do not
276 want to store it in a map, the reader skips a character sequence without
279 If you want to change the functionality of the reader, you can use
280 template parameters to specialize it. When you give a reading
281 command for a map you can give a Reader type as template parameter.
282 With this template parameter you can control how the Reader reads
283 a value from the stream.
285 The reader has the next structure:
288 typedef TypeName Value;
290 void read(std::istream& is, Value& value);
294 For example, the \c "strings" nodemap contains strings and you do not need
295 the value of the string just the length. Then you can implement an own Reader
299 struct LengthReader {
302 void read(std::istream& is, Value& value) {
305 value = tmp.length();
309 reader.readNodeMap<LengthReader>("strings", lengthMap);
312 The global functionality of the reader class can be changed by giving a
313 special template parameter to the GraphReader class. By default, the
314 template parameter is \c DefaultReaderTraits. A reader traits class
315 should provide a nested template class Reader for each type, and a
316 DefaultReader for skipping a value.
318 The specialization of writing is very similar to that of reading.
320 \section u Undirected graphs
322 In a file describing an undirected graph (ugraph, for short) you find an
323 \c uedgeset section instead of the \c edgeset section. The first line of
324 the section describes the names of the maps on the undirected egdes and all
325 next lines describe one undirected edge with the the incident nodes and the
328 The format handles directed edge maps as a syntactical sugar???, if there
329 are two maps with names being the same with a \c '+' and a \c '-' prefix
330 then this will be read as a directed map.
334 label capacity +flow -flow
340 The \c edges section is changed to \c uedges section. This section
341 describes labeled edges and undirected edges. The directed edge label
342 should start with a \c '+' or a \c '-' prefix to decide the direction
352 There are similar classes to the \ref lemon::GraphReader "GraphReader" and
353 \ref lemon::GraphWriter "GraphWriter" which
354 handle the undirected graphs. These classes are
355 the \ref lemon::UGraphReader "UGraphReader"
356 and \ref lemon::UGraphWriter "UGraphWriter".
358 The \ref lemon::UGraphReader::readUEdgeMap() "readUEdgeMap()"
359 function reads an undirected map and the
360 \ref lemon::UGraphReader::readUEdge() "readUEdge()"
361 reads an undirected edge from the file,
364 reader.readUEdgeMap("capacity", capacityMap);
365 reader.readEdgeMap("flow", flowMap);
367 reader.readUEdge("u_edge", u_edge);
368 reader.readEdge("edge", edge);
371 \section advanced Advanced features
373 The graph reader and writer classes give an easy way to read and write
374 graphs. But sometimes we want more advanced features. In this case we can
375 use the more general <tt>lemon reader and writer</tt> interface.
377 The LEMON file format is a section oriented file format. It contains one or
378 more sections, each starting with a line identifying its type
379 (the word starting with the \c \@ character).
380 The content of the section this way cannot contain line with \c \@ first
381 character. The file may contains comment lines with \c # first character.
383 The \ref lemon::LemonReader "LemonReader"
384 and \ref lemon::LemonWriter "LemonWriter"
385 gives a framework to read and
386 write sections. There are various section reader and section writer
387 classes which can be attached to a \ref lemon::LemonReader "LemonReader"
388 or a \ref lemon::LemonWriter "LemonWriter".
390 There are default section readers and writers for reading and writing
391 item sets, and labeled items in the graph. These read and write
392 the format described above. Other type of data can be handled with own
393 section reader and writer classes which are inherited from the
394 \c LemonReader::SectionReader or the
395 \ref lemon::LemonWriter::SectionWriter "LemonWriter::SectionWriter"
398 The next example defines a special section reader which reads the
399 \c \@description sections into a string:
402 class DescriptionReader : LemonReader::SectionReader {
404 virtual bool header(const std::string& line) {
405 std::istringstream ls(line);
408 return head == "@description";
411 virtual void read(std::istream& is) {
413 while (getline(is, line)) {
419 typedef LemonReader::SectionReader Parent;
421 DescriptionReader(LemonReader& reader) : Parent(reader) {}
423 const std::string& description() const {
432 The other advanced stuff of the generalized file format is that
433 multiple edgesets can be stored to the same nodeset. It can be used
434 for example as a network traffic matrix.
436 In our example there is a network with symmetric links and there are assymetric
437 traffic request on the network. This construction can be stored in an
438 undirected graph and in a directed \c ListEdgeSet class. The example
439 shows the input with the \ref lemon::LemonReader "LemonReader" class:
443 ListUGraph::UEdgeMap<double> capacity;
444 ListEdgeSet<ListUGraph> traffic(network);
445 ListEdgeSet<ListUGraph>::EdgeMap<double> request(network);
447 LemonReader reader(std::cin);
448 NodeSetReader<ListUGraph> nodesetReader(reader, network);
449 UEdgeSetReader<ListUGraph>
450 uEdgesetReader(reader, network, nodesetReader);
451 uEdgesetReader.readEdgeMap("capacity", capacity);
452 EdgeSetReader<ListEdgeSet<ListUGraph> >
453 edgesetReader(reader, traffic, nodesetReader, "traffic");
454 edgesetReader.readEdgeMap("request", request);
459 Because both the \ref lemon::GraphReader "GraphReader"
460 and the \ref lemon::UGraphReader "UGraphReader" can be converted
461 to \ref lemon::LemonReader "LemonReader"
462 and it can resolve the label's of the items, the previous
463 result can be achived with the \ref lemon::UGraphReader "UGraphReader"
469 ListUGraph::UEdgeSet<double> capacity;
470 ListEdgeSet<ListUGraph> traffic(network);
471 ListEdgeSet<ListUGraph>::EdgeMap<double> request(network);
473 UGraphReader<ListUGraph> reader(std::cin, network);
474 reader.readEdgeMap("capacity", capacity);
475 EdgeSetReader<ListEdgeSet<ListUGraph> >
476 edgesetReader(reader, traffic, reader, "traffic");
477 edgesetReader.readEdgeMap("request", request);