diff --git a/lemon/Makefile.am b/lemon/Makefile.am --- a/lemon/Makefile.am +++ b/lemon/Makefile.am @@ -37,6 +37,7 @@ lemon/maps.h \ lemon/math.h \ lemon/max_matching.h \ + lemon/nauty_reader.h \ lemon/path.h \ lemon/random.h \ lemon/smart_graph.h \ diff --git a/lemon/nauty_reader.h b/lemon/nauty_reader.h new file mode 100644 --- /dev/null +++ b/lemon/nauty_reader.h @@ -0,0 +1,120 @@ +/* -*- mode: C++; indent-tabs-mode: nil; -*- + * + * This file is a part of LEMON, a generic C++ optimization library. + * + * Copyright (C) 2003-2008 + * Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport + * (Egervary Research Group on Combinatorial Optimization, EGRES). + * + * Permission to use, modify and distribute this software is granted + * provided that this copyright notice appears in all copies. For + * precise terms see the accompanying LICENSE file. + * + * This software is provided "AS IS" with no warranty of any kind, + * express or implied, and with no claim as to its suitability for any + * purpose. + * + */ + +#ifndef LEMON_NAUTY_READER_H +#define LEMON_NAUTY_READER_H + +#include +#include +#include + +/// \ingroup io_group +/// +/// @defgroup nauty_group NAUTY format +/// +/// \brief Read \e Nauty format +/// +/// Tool to read graphs from \e Nauty format data + +/// \ingroup nauty_group +/// \file +/// \brief Nauty file reader. +namespace lemon { + + /// \ingroup nauty_group + /// + /// \brief Nauty file reader + /// + /// The \e geng program is in the \e gtools suite of the nauty + /// package. This tool can generate all non-isomorphic undirected + /// graphs with given node number from several classes (for example, + /// general, connected, biconnected, triangle-free, 4-cycle-free, + /// bipartite and graphs with given edge number and degree + /// constraints). This function reads a \e nauty \e graph6 \e format + /// line from the given stream and builds it in the given graph. + /// + /// The site of nauty package: http://cs.anu.edu.au/~bdm/nauty/ + /// + /// For example, the number of all non-isomorphic connected graphs + /// can be computed with following code. + ///\code + /// int num = 0; + /// SmartGraph graph; + /// while(readNauty(std::cin, graph)) { + /// PlanarityChecking pc(graph); + /// if (pc.run()) ++num; + /// } + /// std::cout << "Number of planar graphs: " << num << std::endl; + ///\endcode + /// + /// The nauty files are quite huge, therefore instead of the direct + /// file generation the pipelining is recommended. + ///\code + /// ./geng -c 10 | ./num_of_pg + ///\endcode + template + std::istream& readNauty(std::istream& is, Graph& graph) { + graph.clear(); + + std::string line; + if (getline(is, line)) { + int index = 0; + + int n; + + if (line[index] == '>') { + index += 10; + } + + char c = line[index++]; c -= 63; + if (c != 63) { + n = int(c); + } else { + c = line[index++]; c -= 63; + n = (int(c) << 12); + c = line[index++]; c -= 63; + n |= (int(c) << 6); + c = line[index++]; c -= 63; + n |= int(c); + } + + std::vector nodes; + for (int i = 0; i < n; ++i) { + nodes.push_back(graph.addNode()); + } + + int bit = -1; + for (int j = 0; j < n; ++j) { + for (int i = 0; i < j; ++i) { + if (bit == -1) { + c = line[index++]; c -= 63; + bit = 5; + } + bool b = (c & (1 << (bit--))) != 0; + + if (b) { + graph.addEdge(nodes[i], nodes[j]); + } + } + } + } + return is; + } +} + +#endif