RhodeCode

INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR})

ADD_LIBRARY(lemon

  arg_parser.cc

  base.cc

  color.cc

INSTALL(

  TARGETS lemon

  ARCHIVE DESTINATION lib

  COMPONENT library)

INSTALL(

  DIRECTORY . bits concepts

  DESTINATION include/lemon

  COMPONENT headers

  FILES_MATCHING PATTERN "*.h")

EXTRA_DIST += \

	lemon/lemon.pc.in \

	lemon/CMakeLists.txt

pkgconfig_DATA += lemon/lemon.pc

lib_LTLIBRARIES += lemon/libemon.la

lemon_libemon_la_SOURCES = \

        lemon/arg_parser.cc \

        lemon/base.cc \

        lemon/color.cc \

#lemon_libemon_la_CXXFLAGS = $(GLPK_CFLAGS) $(CPLEX_CFLAGS) $(SOPLEX_CXXFLAGS)

#lemon_libemon_la_LDFLAGS = $(GLPK_LIBS) $(CPLEX_LIBS) $(SOPLEX_LIBS)

lemon_HEADERS += \

        lemon/arg_parser.h \

	lemon/assert.h \

        lemon/bfs.h \

        lemon/bin_heap.h \

        lemon/color.h \

	lemon/concept_check.h \

        lemon/counter.h \

	lemon/core.h \

        lemon/dfs.h \

        lemon/dijkstra.h \

        lemon/dim2.h \

	lemon/error.h \

        lemon/graph_to_eps.h \

	lemon/kruskal.h \

	lemon/lgf_reader.h \

	lemon/lgf_writer.h \

	lemon/list_graph.h \

	lemon/maps.h \

	lemon/math.h \

	lemon/path.h \

        lemon/random.h \

	lemon/smart_graph.h \

        lemon/time_measure.h \

        lemon/tolerance.h \

bits_HEADERS += \

	lemon/bits/alteration_notifier.h \

	lemon/bits/array_map.h \

	lemon/bits/base_extender.h \

        lemon/bits/bezier.h \

	lemon/bits/default_map.h \

        lemon/bits/enable_if.h \

	lemon/bits/graph_extender.h \

	lemon/bits/map_extender.h \

	lemon/bits/path_dump.h \

	lemon/bits/traits.h \

	lemon/bits/vector_map.h

concept_HEADERS += \

	lemon/concepts/digraph.h \

	lemon/concepts/graph.h \

	lemon/concepts/graph_components.h \

	lemon/concepts/heap.h \

	lemon/concepts/maps.h \

	lemon/concepts/path.h

/* -*- mode: C++; indent-tabs-mode: nil; -*-

 *

 * This file is a part of LEMON, a generic C++ optimization library.

 *

 * Copyright (C) 2003-2008

 * Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport

 * (Egervary Research Group on Combinatorial Optimization, EGRES).

 *

 * Permission to use, modify and distribute this software is granted

 * provided that this copyright notice appears in all copies. For

 * precise terms see the accompanying LICENSE file.

 *

 * This software is provided "AS IS" with no warranty of any kind,

 * express or implied, and with no claim as to its suitability for any

 * purpose.

 *

 */

#ifndef LEMON_GRAPH_TO_EPS_H

#define LEMON_GRAPH_TO_EPS_H

#include<iostream>

#include<fstream>

#include<sstream>

#include<algorithm>

#include<vector>

#ifndef WIN32

#include<sys/time.h>

#include<ctime>

#else

#endif

#include<lemon/math.h>

#include<lemon/core.h>

#include<lemon/dim2.h>

#include<lemon/maps.h>

#include<lemon/color.h>

#include<lemon/bits/bezier.h>

#include<lemon/error.h>

///\ingroup eps_io

///\file

///\brief A well configurable tool for visualizing graphs

namespace lemon {

  namespace _graph_to_eps_bits {

    template<class MT>

    class _NegY {

    public:

      typedef typename MT::Key Key;

      typedef typename MT::Value Value;

      const MT ↦

      int yscale;

      _NegY(const MT &m,bool b) : map(m), yscale(1-b*2) {}

      Value operator[](Key n) { return Value(map[n].x,map[n].y*yscale);}

    };

  }

///Default traits class of GraphToEps

///Default traits class of \ref GraphToEps.

///

///\c G is the type of the underlying graph.

template<class G>

struct DefaultGraphToEpsTraits

{

  typedef G Graph;

  typedef typename Graph::Node Node;

  typedef typename Graph::NodeIt NodeIt;

  typedef typename Graph::Arc Arc;

  typedef typename Graph::ArcIt ArcIt;

  typedef typename Graph::InArcIt InArcIt;

  typedef typename Graph::OutArcIt OutArcIt;

  const Graph &g;

  ///namely it inserts a <tt>%%Title:</tt> DSC field to the header of

  ///the EPS file.

  GraphToEps<T> &title(const std::string &t) {_title=t;return *this;}

  ///Sets the copyright statement.

  ///Sets the copyright statement of the generated image,

  ///namely it inserts a <tt>%%Copyright:</tt> DSC field to the header of

  ///the EPS file.

  GraphToEps<T> &copyright(const std::string &t) {_copyright=t;return *this;}

protected:

  bool isInsideNode(dim2::Point<double> p, double r,int t)

  {

    switch(t) {

    case CIRCLE:

    case MALE:

    case FEMALE:

      return p.normSquare()<=r*r;

    case SQUARE:

      return p.x<=r&&p.x>=-r&&p.y<=r&&p.y>=-r;

    case DIAMOND:

      return p.x+p.y<=r && p.x-p.y<=r && -p.x+p.y<=r && -p.x-p.y<=r;

    }

    return false;

  }

public:

  ~GraphToEps() { }

  ///Draws the graph.

  ///Like other functions using

  ///\ref named-templ-func-param "named template parameters",

  ///this function calls the algorithm itself, i.e. in this case

  ///it draws the graph.

  void run() {

    const double EPSILON=1e-9;

    if(dontPrint) return;

    _graph_to_eps_bits::_NegY<typename T::CoordsMapType>

      mycoords(_coords,_negY);

    os << "%!PS-Adobe-2.0 EPSF-2.0\n";

    if(_title.size()>0) os << "%%Title: " << _title << '\n';

     if(_copyright.size()>0) os << "%%Copyright: " << _copyright << '\n';

    os << "%%Creator: LEMON, graphToEps()\n";

    {

#ifndef WIN32

      timeval tv;

      gettimeofday(&tv, 0);

      char cbuf[26];

      ctime_r(&tv.tv_sec,cbuf);

#else

#endif

    }

    if (_autoArcWidthScale) {

      double max_w=0;

      for(ArcIt e(g);e!=INVALID;++e)

        max_w=std::max(double(_arcWidths[e]),max_w);

      if(max_w>EPSILON) {

        _arcWidthScale/=max_w;

      }

    }

    if (_autoNodeScale) {

      double max_s=0;

      for(NodeIt n(g);n!=INVALID;++n)

        max_s=std::max(double(_nodeSizes[n]),max_s);

      if(max_s>EPSILON) {

        _nodeScale/=max_s;

      }

    }

    double diag_len = 1;

    if(!(_absoluteNodeSizes&&_absoluteArcWidths)) {

      dim2::Box<double> bb;

      for(NodeIt n(g);n!=INVALID;++n) bb.add(mycoords[n]);

      if (bb.empty()) {

        bb = dim2::Box<double>(dim2::Point<double>(0,0));

      }

      diag_len = std::sqrt((bb.bottomLeft()-bb.topRight()).normSquare());

      if(diag_len<EPSILON) diag_len = 1;

      if(!_absoluteNodeSizes) _nodeScale*=diag_len;

      if(!_absoluteArcWidths) _arcWidthScale*=diag_len;

    }

    dim2::Box<double> bb;

    for(NodeIt n(g);n!=INVALID;++n) {

      double ns=_nodeSizes[n]*_nodeScale;

      dim2::Point<double> p(ns,ns);

      switch(_nodeShapes[n]) {

      case CIRCLE:

      case SQUARE:

      case DIAMOND:

        bb.add(p+mycoords[n]);

        bb.add(-p+mycoords[n]);

        break;

      case MALE:

        bb.add(-p+mycoords[n]);

        bb.add(dim2::Point<double>(1.5*ns,1.5*std::sqrt(3.0)*ns)+mycoords[n]);

        break;

      case FEMALE:

 * 1. Redistributions of source code must retain the above copyright

 *    notice, this list of conditions and the following disclaimer.

 *

 * 2. Redistributions in binary form must reproduce the above copyright

 *    notice, this list of conditions and the following disclaimer in the

 *    documentation and/or other materials provided with the distribution.

 *

 * 3. The names of its contributors may not be used to endorse or promote

 *    products derived from this software without specific prior written

 *    permission.

 *

 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS

 * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT

 * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS

 * FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE

 * COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,

 * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES

 * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR

 * SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)

 * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,

 * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)

 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED

 * OF THE POSSIBILITY OF SUCH DAMAGE.

 *

 *

 * Any feedback is very welcome.

 * http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html

 * email: m-mat @ math.sci.hiroshima-u.ac.jp (remove space)

 */

#ifndef LEMON_RANDOM_H

#define LEMON_RANDOM_H

#include <algorithm>

#include <iterator>

#include <vector>

#include <limits>

#include <fstream>

#include <lemon/math.h>

#include <lemon/dim2.h>

#ifndef WIN32

#include <sys/time.h>

#include <ctime>

#include <sys/types.h>

#include <unistd.h>

#else

#endif

///\ingroup misc

///\file

///\brief Mersenne Twister random number generator

namespace lemon {

  namespace _random_bits {

    template <typename _Word, int _bits = std::numeric_limits<_Word>::digits>

    struct RandomTraits {};

    template <typename _Word>

    struct RandomTraits<_Word, 32> {

      typedef _Word Word;

      static const int bits = 32;

      static const int length = 624;

      static const int shift = 397;

      static const Word mul = 0x6c078965u;

      static const Word arrayInit = 0x012BD6AAu;

      static const Word arrayMul1 = 0x0019660Du;

      static const Word arrayMul2 = 0x5D588B65u;

      static const Word mask = 0x9908B0DFu;

      static const Word loMask = (1u << 31) - 1;

      static const Word hiMask = ~loMask;

      static Word tempering(Word rnd) {

        rnd ^= (rnd >> 11);

        rnd ^= (rnd << 7) & 0x9D2C5680u;

        rnd ^= (rnd << 15) & 0xEFC60000u;

        rnd ^= (rnd >> 18);

        return rnd;

      }

    };

    template <typename _Word>

    struct RandomTraits<_Word, 64> {

      typedef _Word Word;

      static const int bits = 64;

    bool seed() {

#ifndef WIN32

      if (seedFromFile("/dev/urandom", 0)) return true;

#endif

      if (seedFromTime()) return true;

      return false;

    }

    /// \brief Seeding from file

    ///

    /// Seeding the random sequence from file. The linux kernel has two

    /// devices, <tt>/dev/random</tt> and <tt>/dev/urandom</tt> which

    /// could give good seed values for pseudo random generators (The

    /// difference between two devices is that the <tt>random</tt> may

    /// block the reading operation while the kernel can give good

    /// source of randomness, while the <tt>urandom</tt> does not

    /// block the input, but it could give back bytes with worse

    /// entropy).

    /// \param file The source file

    /// \param offset The offset, from the file read.

    /// \return True when the seeding successes.

#ifndef WIN32

    bool seedFromFile(const std::string& file = "/dev/urandom", int offset = 0)

#else

    bool seedFromFile(const std::string& file = "", int offset = 0)

#endif

    {

      std::ifstream rs(file.c_str());

      const int size = 4;

      Word buf[size];

      if (offset != 0 && !rs.seekg(offset)) return false;

      if (!rs.read(reinterpret_cast<char*>(buf), sizeof(buf))) return false;

      seed(buf, buf + size);

      return true;

    }

    /// \brief Seding from process id and time

    ///

    /// Seding from process id and time. This function uses the

    /// current process id and the current time for initialize the

    /// random sequence.

    /// \return Currently always true.

    bool seedFromTime() {

#ifndef WIN32

      timeval tv;

      gettimeofday(&tv, 0);

      seed(getpid() + tv.tv_sec + tv.tv_usec);

#else

#endif

      return true;

    }

    /// @}

    ///\name Uniform distributions

    ///

    /// @{

    /// \brief Returns a random real number from the range [0, 1)

    ///

    /// It returns a random real number from the range [0, 1). The

    /// default Number type is \c double.

    template <typename Number>

    Number real() {

      return _random_bits::RealConversion<Number, Word>::convert(core);

    }

    double real() {

      return real<double>();

    }

    /// @}

    ///\name Uniform distributions

    ///

    /// @{

    /// \brief Returns a random real number from the range [0, 1)

    ///

    /// It returns a random double from the range [0, 1).

    double operator()() {

      return real<double>();

    }

    /// \brief Returns a random real number from the range [0, b)

    ///

    /// It returns a random real number from the range [0, b).

    double operator()(double b) {

      return real<double>() * b;

    }

    /// \brief Returns a random real number from the range [a, b)

    ///

    /// It returns a random real number from the range [a, b).

    double operator()(double a, double b) {

      return real<double>() * (b - a) + a;

/* -*- mode: C++; indent-tabs-mode: nil; -*-

 *

 * This file is a part of LEMON, a generic C++ optimization library.

 *

 * Copyright (C) 2003-2008

 * Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport

 * (Egervary Research Group on Combinatorial Optimization, EGRES).

 *

 * Permission to use, modify and distribute this software is granted

 * provided that this copyright notice appears in all copies. For

 * precise terms see the accompanying LICENSE file.

 *

 * This software is provided "AS IS" with no warranty of any kind,

 * express or implied, and with no claim as to its suitability for any

 * purpose.

 *

 */

#ifndef LEMON_TIME_MEASURE_H

#define LEMON_TIME_MEASURE_H

///\ingroup timecount

///\file

///\brief Tools for measuring cpu usage

#ifdef WIN32

#else

#include <unistd.h>

#include <sys/times.h>

#include <sys/time.h>

#endif

#include <string>

#include <fstream>

#include <iostream>

namespace lemon {

  /// \addtogroup timecount

  /// @{

  /// A class to store (cpu)time instances.

  /// This class stores five time values.

  /// - a real time

  /// - a user cpu time

  /// - a system cpu time

  /// - a user cpu time of children

  /// - a system cpu time of children

  ///

  /// TimeStamp's can be added to or substracted from each other and

  /// they can be pushed to a stream.

  ///

  /// In most cases, perhaps the \ref Timer or the \ref TimeReport

  /// class is what you want to use instead.

  class TimeStamp

  {

    double utime;

    double stime;

    double cutime;

    double cstime;

    double rtime;

    void _reset() {

      utime = stime = cutime = cstime = rtime = 0;

    }

  public:

    ///Read the current time values of the process

    void stamp()

    {

#ifndef WIN32

      timeval tv;

      gettimeofday(&tv, 0);

      rtime=tv.tv_sec+double(tv.tv_usec)/1e6;

      tms ts;

      double tck=sysconf(_SC_CLK_TCK);

      times(&ts);

      utime=ts.tms_utime/tck;

      stime=ts.tms_stime/tck;

      cutime=ts.tms_cutime/tck;

      cstime=ts.tms_cstime/tck;

#else

#endif

    }

    /// Constructor initializing with zero

    TimeStamp()

    { _reset(); }

    ///Constructor initializing with the current time values of the process

    TimeStamp(void *) { stamp();}

    ///Set every time value to zero

    TimeStamp &reset() {_reset();return *this;}

    ///\e

    TimeStamp &operator+=(const TimeStamp &b)

    {

      utime+=b.utime;

      stime+=b.stime;

      cutime+=b.cutime;

      cstime+=b.cstime;

      rtime+=b.rtime;

      return *this;

    }

    ///\e

    TimeStamp operator+(const TimeStamp &b) const

    {

      TimeStamp t(*this);

      return t+=b;

    }

    ///\e

    TimeStamp &operator-=(const TimeStamp &b)

    {

      utime-=b.utime;

      stime-=b.stime;

      cutime-=b.cutime;

      cstime-=b.cstime;

      rtime-=b.rtime;

      return *this;

    }

    ///\e

    TimeStamp operator-(const TimeStamp &b) const

    {

      TimeStamp t(*this);

      return t-=b;

    }

    ///\e

    TimeStamp &operator*=(double b)

    {

      utime*=b;