[209] | 1 | /* -*- mode: C++; indent-tabs-mode: nil; -*- |
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[40] | 2 | * |
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[209] | 3 | * This file is a part of LEMON, a generic C++ optimization library. |
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[40] | 4 | * |
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[1092] | 5 | * Copyright (C) 2003-2013 |
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[40] | 6 | * Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport |
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| 7 | * (Egervary Research Group on Combinatorial Optimization, EGRES). |
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| 8 | * |
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| 9 | * Permission to use, modify and distribute this software is granted |
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| 10 | * provided that this copyright notice appears in all copies. For |
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| 11 | * precise terms see the accompanying LICENSE file. |
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| 12 | * |
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| 13 | * This software is provided "AS IS" with no warranty of any kind, |
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| 14 | * express or implied, and with no claim as to its suitability for any |
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| 15 | * purpose. |
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| 16 | * |
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| 17 | */ |
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| 18 | |
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[406] | 19 | namespace lemon { |
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| 20 | |
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[40] | 21 | /** |
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| 22 | @defgroup datas Data Structures |
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[559] | 23 | This group contains the several data structures implemented in LEMON. |
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[40] | 24 | */ |
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| 25 | |
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| 26 | /** |
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| 27 | @defgroup graphs Graph Structures |
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| 28 | @ingroup datas |
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| 29 | \brief Graph structures implemented in LEMON. |
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| 30 | |
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[209] | 31 | The implementation of combinatorial algorithms heavily relies on |
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| 32 | efficient graph implementations. LEMON offers data structures which are |
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| 33 | planned to be easily used in an experimental phase of implementation studies, |
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| 34 | and thereafter the program code can be made efficient by small modifications. |
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[40] | 35 | |
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| 36 | The most efficient implementation of diverse applications require the |
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| 37 | usage of different physical graph implementations. These differences |
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| 38 | appear in the size of graph we require to handle, memory or time usage |
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| 39 | limitations or in the set of operations through which the graph can be |
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| 40 | accessed. LEMON provides several physical graph structures to meet |
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| 41 | the diverging requirements of the possible users. In order to save on |
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| 42 | running time or on memory usage, some structures may fail to provide |
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[83] | 43 | some graph features like arc/edge or node deletion. |
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[40] | 44 | |
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[209] | 45 | Alteration of standard containers need a very limited number of |
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| 46 | operations, these together satisfy the everyday requirements. |
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| 47 | In the case of graph structures, different operations are needed which do |
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| 48 | not alter the physical graph, but gives another view. If some nodes or |
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[83] | 49 | arcs have to be hidden or the reverse oriented graph have to be used, then |
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[209] | 50 | this is the case. It also may happen that in a flow implementation |
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| 51 | the residual graph can be accessed by another algorithm, or a node-set |
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| 52 | is to be shrunk for another algorithm. |
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| 53 | LEMON also provides a variety of graphs for these requirements called |
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| 54 | \ref graph_adaptors "graph adaptors". Adaptors cannot be used alone but only |
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| 55 | in conjunction with other graph representations. |
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[40] | 56 | |
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| 57 | You are free to use the graph structure that fit your requirements |
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| 58 | the best, most graph algorithms and auxiliary data structures can be used |
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[314] | 59 | with any graph structure. |
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| 60 | |
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| 61 | <b>See also:</b> \ref graph_concepts "Graph Structure Concepts". |
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[40] | 62 | */ |
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| 63 | |
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| 64 | /** |
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[451] | 65 | @defgroup graph_adaptors Adaptor Classes for Graphs |
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[416] | 66 | @ingroup graphs |
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[451] | 67 | \brief Adaptor classes for digraphs and graphs |
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| 68 | |
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| 69 | This group contains several useful adaptor classes for digraphs and graphs. |
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[416] | 70 | |
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| 71 | The main parts of LEMON are the different graph structures, generic |
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[451] | 72 | graph algorithms, graph concepts, which couple them, and graph |
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[416] | 73 | adaptors. While the previous notions are more or less clear, the |
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| 74 | latter one needs further explanation. Graph adaptors are graph classes |
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| 75 | which serve for considering graph structures in different ways. |
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| 76 | |
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| 77 | A short example makes this much clearer. Suppose that we have an |
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[451] | 78 | instance \c g of a directed graph type, say ListDigraph and an algorithm |
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[416] | 79 | \code |
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| 80 | template <typename Digraph> |
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| 81 | int algorithm(const Digraph&); |
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| 82 | \endcode |
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| 83 | is needed to run on the reverse oriented graph. It may be expensive |
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| 84 | (in time or in memory usage) to copy \c g with the reversed |
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| 85 | arcs. In this case, an adaptor class is used, which (according |
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[451] | 86 | to LEMON \ref concepts::Digraph "digraph concepts") works as a digraph. |
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| 87 | The adaptor uses the original digraph structure and digraph operations when |
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| 88 | methods of the reversed oriented graph are called. This means that the adaptor |
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| 89 | have minor memory usage, and do not perform sophisticated algorithmic |
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[416] | 90 | actions. The purpose of it is to give a tool for the cases when a |
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| 91 | graph have to be used in a specific alteration. If this alteration is |
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[451] | 92 | obtained by a usual construction like filtering the node or the arc set or |
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[416] | 93 | considering a new orientation, then an adaptor is worthwhile to use. |
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| 94 | To come back to the reverse oriented graph, in this situation |
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| 95 | \code |
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| 96 | template<typename Digraph> class ReverseDigraph; |
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| 97 | \endcode |
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| 98 | template class can be used. The code looks as follows |
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| 99 | \code |
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| 100 | ListDigraph g; |
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[451] | 101 | ReverseDigraph<ListDigraph> rg(g); |
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[416] | 102 | int result = algorithm(rg); |
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| 103 | \endcode |
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[451] | 104 | During running the algorithm, the original digraph \c g is untouched. |
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| 105 | This techniques give rise to an elegant code, and based on stable |
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[416] | 106 | graph adaptors, complex algorithms can be implemented easily. |
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| 107 | |
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[451] | 108 | In flow, circulation and matching problems, the residual |
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[416] | 109 | graph is of particular importance. Combining an adaptor implementing |
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[451] | 110 | this with shortest path algorithms or minimum mean cycle algorithms, |
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[416] | 111 | a range of weighted and cardinality optimization algorithms can be |
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| 112 | obtained. For other examples, the interested user is referred to the |
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| 113 | detailed documentation of particular adaptors. |
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| 114 | |
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[1050] | 115 | Since the adaptor classes conform to the \ref graph_concepts "graph concepts", |
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| 116 | an adaptor can even be applied to another one. |
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| 117 | The following image illustrates a situation when a \ref SubDigraph adaptor |
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| 118 | is applied on a digraph and \ref Undirector is applied on the subgraph. |
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| 119 | |
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| 120 | \image html adaptors2.png |
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| 121 | \image latex adaptors2.eps "Using graph adaptors" width=\textwidth |
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| 122 | |
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[416] | 123 | The behavior of graph adaptors can be very different. Some of them keep |
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| 124 | capabilities of the original graph while in other cases this would be |
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[451] | 125 | meaningless. This means that the concepts that they meet depend |
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| 126 | on the graph adaptor, and the wrapped graph. |
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| 127 | For example, if an arc of a reversed digraph is deleted, this is carried |
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| 128 | out by deleting the corresponding arc of the original digraph, thus the |
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| 129 | adaptor modifies the original digraph. |
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| 130 | However in case of a residual digraph, this operation has no sense. |
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[416] | 131 | |
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| 132 | Let us stand one more example here to simplify your work. |
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[451] | 133 | ReverseDigraph has constructor |
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[416] | 134 | \code |
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| 135 | ReverseDigraph(Digraph& digraph); |
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| 136 | \endcode |
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[451] | 137 | This means that in a situation, when a <tt>const %ListDigraph&</tt> |
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[416] | 138 | reference to a graph is given, then it have to be instantiated with |
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[451] | 139 | <tt>Digraph=const %ListDigraph</tt>. |
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[416] | 140 | \code |
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| 141 | int algorithm1(const ListDigraph& g) { |
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[451] | 142 | ReverseDigraph<const ListDigraph> rg(g); |
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[416] | 143 | return algorithm2(rg); |
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| 144 | } |
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| 145 | \endcode |
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| 146 | */ |
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| 147 | |
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| 148 | /** |
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[209] | 149 | @defgroup maps Maps |
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[40] | 150 | @ingroup datas |
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[50] | 151 | \brief Map structures implemented in LEMON. |
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[40] | 152 | |
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[559] | 153 | This group contains the map structures implemented in LEMON. |
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[50] | 154 | |
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[314] | 155 | LEMON provides several special purpose maps and map adaptors that e.g. combine |
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[40] | 156 | new maps from existing ones. |
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[314] | 157 | |
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| 158 | <b>See also:</b> \ref map_concepts "Map Concepts". |
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[40] | 159 | */ |
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| 160 | |
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| 161 | /** |
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[209] | 162 | @defgroup graph_maps Graph Maps |
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[40] | 163 | @ingroup maps |
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[83] | 164 | \brief Special graph-related maps. |
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[40] | 165 | |
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[559] | 166 | This group contains maps that are specifically designed to assign |
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[406] | 167 | values to the nodes and arcs/edges of graphs. |
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| 168 | |
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| 169 | If you are looking for the standard graph maps (\c NodeMap, \c ArcMap, |
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| 170 | \c EdgeMap), see the \ref graph_concepts "Graph Structure Concepts". |
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[40] | 171 | */ |
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| 172 | |
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| 173 | /** |
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| 174 | \defgroup map_adaptors Map Adaptors |
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| 175 | \ingroup maps |
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| 176 | \brief Tools to create new maps from existing ones |
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| 177 | |
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[559] | 178 | This group contains map adaptors that are used to create "implicit" |
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[50] | 179 | maps from other maps. |
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[40] | 180 | |
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[406] | 181 | Most of them are \ref concepts::ReadMap "read-only maps". |
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[83] | 182 | They can make arithmetic and logical operations between one or two maps |
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| 183 | (negation, shifting, addition, multiplication, logical 'and', 'or', |
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| 184 | 'not' etc.) or e.g. convert a map to another one of different Value type. |
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[40] | 185 | |
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[50] | 186 | The typical usage of this classes is passing implicit maps to |
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[40] | 187 | algorithms. If a function type algorithm is called then the function |
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| 188 | type map adaptors can be used comfortable. For example let's see the |
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[314] | 189 | usage of map adaptors with the \c graphToEps() function. |
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[40] | 190 | \code |
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| 191 | Color nodeColor(int deg) { |
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| 192 | if (deg >= 2) { |
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| 193 | return Color(0.5, 0.0, 0.5); |
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| 194 | } else if (deg == 1) { |
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| 195 | return Color(1.0, 0.5, 1.0); |
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| 196 | } else { |
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| 197 | return Color(0.0, 0.0, 0.0); |
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| 198 | } |
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| 199 | } |
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[209] | 200 | |
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[83] | 201 | Digraph::NodeMap<int> degree_map(graph); |
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[209] | 202 | |
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[314] | 203 | graphToEps(graph, "graph.eps") |
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[40] | 204 | .coords(coords).scaleToA4().undirected() |
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[83] | 205 | .nodeColors(composeMap(functorToMap(nodeColor), degree_map)) |
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[40] | 206 | .run(); |
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[209] | 207 | \endcode |
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[83] | 208 | The \c functorToMap() function makes an \c int to \c Color map from the |
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[314] | 209 | \c nodeColor() function. The \c composeMap() compose the \c degree_map |
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[83] | 210 | and the previously created map. The composed map is a proper function to |
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| 211 | get the color of each node. |
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[40] | 212 | |
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| 213 | The usage with class type algorithms is little bit harder. In this |
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| 214 | case the function type map adaptors can not be used, because the |
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[50] | 215 | function map adaptors give back temporary objects. |
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[40] | 216 | \code |
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[83] | 217 | Digraph graph; |
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| 218 | |
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| 219 | typedef Digraph::ArcMap<double> DoubleArcMap; |
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| 220 | DoubleArcMap length(graph); |
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| 221 | DoubleArcMap speed(graph); |
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| 222 | |
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| 223 | typedef DivMap<DoubleArcMap, DoubleArcMap> TimeMap; |
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[40] | 224 | TimeMap time(length, speed); |
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[209] | 225 | |
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[83] | 226 | Dijkstra<Digraph, TimeMap> dijkstra(graph, time); |
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[40] | 227 | dijkstra.run(source, target); |
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| 228 | \endcode |
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[83] | 229 | We have a length map and a maximum speed map on the arcs of a digraph. |
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| 230 | The minimum time to pass the arc can be calculated as the division of |
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| 231 | the two maps which can be done implicitly with the \c DivMap template |
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[40] | 232 | class. We use the implicit minimum time map as the length map of the |
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| 233 | \c Dijkstra algorithm. |
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| 234 | */ |
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| 235 | |
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| 236 | /** |
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| 237 | @defgroup paths Path Structures |
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| 238 | @ingroup datas |
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[318] | 239 | \brief %Path structures implemented in LEMON. |
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[40] | 240 | |
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[559] | 241 | This group contains the path structures implemented in LEMON. |
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[40] | 242 | |
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[50] | 243 | LEMON provides flexible data structures to work with paths. |
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| 244 | All of them have similar interfaces and they can be copied easily with |
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| 245 | assignment operators and copy constructors. This makes it easy and |
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[40] | 246 | efficient to have e.g. the Dijkstra algorithm to store its result in |
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| 247 | any kind of path structure. |
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| 248 | |
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[710] | 249 | \sa \ref concepts::Path "Path concept" |
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| 250 | */ |
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| 251 | |
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| 252 | /** |
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| 253 | @defgroup heaps Heap Structures |
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| 254 | @ingroup datas |
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| 255 | \brief %Heap structures implemented in LEMON. |
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| 256 | |
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| 257 | This group contains the heap structures implemented in LEMON. |
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| 258 | |
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| 259 | LEMON provides several heap classes. They are efficient implementations |
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| 260 | of the abstract data type \e priority \e queue. They store items with |
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| 261 | specified values called \e priorities in such a way that finding and |
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| 262 | removing the item with minimum priority are efficient. |
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| 263 | The basic operations are adding and erasing items, changing the priority |
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| 264 | of an item, etc. |
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| 265 | |
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| 266 | Heaps are crucial in several algorithms, such as Dijkstra and Prim. |
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| 267 | The heap implementations have the same interface, thus any of them can be |
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| 268 | used easily in such algorithms. |
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| 269 | |
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| 270 | \sa \ref concepts::Heap "Heap concept" |
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| 271 | */ |
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| 272 | |
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| 273 | /** |
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[40] | 274 | @defgroup auxdat Auxiliary Data Structures |
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| 275 | @ingroup datas |
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[50] | 276 | \brief Auxiliary data structures implemented in LEMON. |
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[40] | 277 | |
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[559] | 278 | This group contains some data structures implemented in LEMON in |
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[40] | 279 | order to make it easier to implement combinatorial algorithms. |
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| 280 | */ |
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| 281 | |
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| 282 | /** |
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[714] | 283 | @defgroup geomdat Geometric Data Structures |
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| 284 | @ingroup auxdat |
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| 285 | \brief Geometric data structures implemented in LEMON. |
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| 286 | |
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| 287 | This group contains geometric data structures implemented in LEMON. |
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| 288 | |
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| 289 | - \ref lemon::dim2::Point "dim2::Point" implements a two dimensional |
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| 290 | vector with the usual operations. |
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| 291 | - \ref lemon::dim2::Box "dim2::Box" can be used to determine the |
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| 292 | rectangular bounding box of a set of \ref lemon::dim2::Point |
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| 293 | "dim2::Point"'s. |
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| 294 | */ |
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| 295 | |
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| 296 | /** |
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| 297 | @defgroup matrices Matrices |
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| 298 | @ingroup auxdat |
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| 299 | \brief Two dimensional data storages implemented in LEMON. |
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| 300 | |
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| 301 | This group contains two dimensional data storages implemented in LEMON. |
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| 302 | */ |
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| 303 | |
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| 304 | /** |
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[40] | 305 | @defgroup algs Algorithms |
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[559] | 306 | \brief This group contains the several algorithms |
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[40] | 307 | implemented in LEMON. |
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| 308 | |
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[559] | 309 | This group contains the several algorithms |
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[40] | 310 | implemented in LEMON. |
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| 311 | */ |
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| 312 | |
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| 313 | /** |
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| 314 | @defgroup search Graph Search |
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| 315 | @ingroup algs |
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[50] | 316 | \brief Common graph search algorithms. |
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[40] | 317 | |
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[559] | 318 | This group contains the common graph search algorithms, namely |
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[755] | 319 | \e breadth-first \e search (BFS) and \e depth-first \e search (DFS) |
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[1053] | 320 | \cite clrs01algorithms. |
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[40] | 321 | */ |
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| 322 | |
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| 323 | /** |
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[314] | 324 | @defgroup shortest_path Shortest Path Algorithms |
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[40] | 325 | @ingroup algs |
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[50] | 326 | \brief Algorithms for finding shortest paths. |
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[40] | 327 | |
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[755] | 328 | This group contains the algorithms for finding shortest paths in digraphs |
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[1053] | 329 | \cite clrs01algorithms. |
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[406] | 330 | |
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| 331 | - \ref Dijkstra algorithm for finding shortest paths from a source node |
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| 332 | when all arc lengths are non-negative. |
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| 333 | - \ref BellmanFord "Bellman-Ford" algorithm for finding shortest paths |
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| 334 | from a source node when arc lenghts can be either positive or negative, |
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| 335 | but the digraph should not contain directed cycles with negative total |
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| 336 | length. |
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| 337 | - \ref FloydWarshall "Floyd-Warshall" and \ref Johnson "Johnson" algorithms |
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| 338 | for solving the \e all-pairs \e shortest \e paths \e problem when arc |
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| 339 | lenghts can be either positive or negative, but the digraph should |
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| 340 | not contain directed cycles with negative total length. |
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| 341 | - \ref Suurballe A successive shortest path algorithm for finding |
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| 342 | arc-disjoint paths between two nodes having minimum total length. |
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[40] | 343 | */ |
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| 344 | |
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[209] | 345 | /** |
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[714] | 346 | @defgroup spantree Minimum Spanning Tree Algorithms |
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| 347 | @ingroup algs |
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| 348 | \brief Algorithms for finding minimum cost spanning trees and arborescences. |
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| 349 | |
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| 350 | This group contains the algorithms for finding minimum cost spanning |
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[1053] | 351 | trees and arborescences \cite clrs01algorithms. |
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[714] | 352 | */ |
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| 353 | |
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| 354 | /** |
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[314] | 355 | @defgroup max_flow Maximum Flow Algorithms |
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[209] | 356 | @ingroup algs |
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[50] | 357 | \brief Algorithms for finding maximum flows. |
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[40] | 358 | |
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[559] | 359 | This group contains the algorithms for finding maximum flows and |
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[1053] | 360 | feasible circulations \cite clrs01algorithms, \cite amo93networkflows. |
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[40] | 361 | |
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[406] | 362 | The \e maximum \e flow \e problem is to find a flow of maximum value between |
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| 363 | a single source and a single target. Formally, there is a \f$G=(V,A)\f$ |
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[609] | 364 | digraph, a \f$cap: A\rightarrow\mathbf{R}^+_0\f$ capacity function and |
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[406] | 365 | \f$s, t \in V\f$ source and target nodes. |
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[609] | 366 | A maximum flow is an \f$f: A\rightarrow\mathbf{R}^+_0\f$ solution of the |
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[406] | 367 | following optimization problem. |
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[40] | 368 | |
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[609] | 369 | \f[ \max\sum_{sv\in A} f(sv) - \sum_{vs\in A} f(vs) \f] |
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| 370 | \f[ \sum_{uv\in A} f(uv) = \sum_{vu\in A} f(vu) |
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| 371 | \quad \forall u\in V\setminus\{s,t\} \f] |
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| 372 | \f[ 0 \leq f(uv) \leq cap(uv) \quad \forall uv\in A \f] |
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[40] | 373 | |
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[50] | 374 | LEMON contains several algorithms for solving maximum flow problems: |
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[755] | 375 | - \ref EdmondsKarp Edmonds-Karp algorithm |
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[1053] | 376 | \cite edmondskarp72theoretical. |
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[755] | 377 | - \ref Preflow Goldberg-Tarjan's preflow push-relabel algorithm |
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[1053] | 378 | \cite goldberg88newapproach. |
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[755] | 379 | - \ref DinitzSleatorTarjan Dinitz's blocking flow algorithm with dynamic trees |
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[1053] | 380 | \cite dinic70algorithm, \cite sleator83dynamic. |
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[755] | 381 | - \ref GoldbergTarjan !Preflow push-relabel algorithm with dynamic trees |
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[1053] | 382 | \cite goldberg88newapproach, \cite sleator83dynamic. |
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[40] | 383 | |
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[755] | 384 | In most cases the \ref Preflow algorithm provides the |
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[406] | 385 | fastest method for computing a maximum flow. All implementations |
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[651] | 386 | also provide functions to query the minimum cut, which is the dual |
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| 387 | problem of maximum flow. |
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| 388 | |
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[869] | 389 | \ref Circulation is a preflow push-relabel algorithm implemented directly |
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[651] | 390 | for finding feasible circulations, which is a somewhat different problem, |
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| 391 | but it is strongly related to maximum flow. |
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| 392 | For more information, see \ref Circulation. |
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[40] | 393 | */ |
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| 394 | |
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| 395 | /** |
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[663] | 396 | @defgroup min_cost_flow_algs Minimum Cost Flow Algorithms |
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[40] | 397 | @ingroup algs |
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| 398 | |
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[50] | 399 | \brief Algorithms for finding minimum cost flows and circulations. |
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[40] | 400 | |
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[609] | 401 | This group contains the algorithms for finding minimum cost flows and |
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[1053] | 402 | circulations \cite amo93networkflows. For more information about this |
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[1049] | 403 | problem and its dual solution, see: \ref min_cost_flow |
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[755] | 404 | "Minimum Cost Flow Problem". |
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[406] | 405 | |
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[663] | 406 | LEMON contains several algorithms for this problem. |
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[609] | 407 | - \ref NetworkSimplex Primal Network Simplex algorithm with various |
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[1053] | 408 | pivot strategies \cite dantzig63linearprog, \cite kellyoneill91netsimplex. |
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[813] | 409 | - \ref CostScaling Cost Scaling algorithm based on push/augment and |
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[1053] | 410 | relabel operations \cite goldberg90approximation, \cite goldberg97efficient, |
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| 411 | \cite bunnagel98efficient. |
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[813] | 412 | - \ref CapacityScaling Capacity Scaling algorithm based on the successive |
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[1053] | 413 | shortest path method \cite edmondskarp72theoretical. |
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[813] | 414 | - \ref CycleCanceling Cycle-Canceling algorithms, two of which are |
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[1053] | 415 | strongly polynomial \cite klein67primal, \cite goldberg89cyclecanceling. |
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[609] | 416 | |
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[919] | 417 | In general, \ref NetworkSimplex and \ref CostScaling are the most efficient |
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[1003] | 418 | implementations. |
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| 419 | \ref NetworkSimplex is usually the fastest on relatively small graphs (up to |
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| 420 | several thousands of nodes) and on dense graphs, while \ref CostScaling is |
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| 421 | typically more efficient on large graphs (e.g. hundreds of thousands of |
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| 422 | nodes or above), especially if they are sparse. |
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| 423 | However, other algorithms could be faster in special cases. |
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[609] | 424 | For example, if the total supply and/or capacities are rather small, |
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[1093] | 425 | \ref CapacityScaling is usually the fastest algorithm |
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| 426 | (without effective scaling). |
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[1002] | 427 | |
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| 428 | These classes are intended to be used with integer-valued input data |
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| 429 | (capacities, supply values, and costs), except for \ref CapacityScaling, |
---|
| 430 | which is capable of handling real-valued arc costs (other numerical |
---|
| 431 | data are required to be integer). |
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[1051] | 432 | |
---|
[1092] | 433 | For more details about these implementations and for a comprehensive |
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[1053] | 434 | experimental study, see the paper \cite KiralyKovacs12MCF. |
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[1051] | 435 | It also compares these codes to other publicly available |
---|
| 436 | minimum cost flow solvers. |
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[40] | 437 | */ |
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| 438 | |
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| 439 | /** |
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[314] | 440 | @defgroup min_cut Minimum Cut Algorithms |
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[209] | 441 | @ingroup algs |
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[40] | 442 | |
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[50] | 443 | \brief Algorithms for finding minimum cut in graphs. |
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[40] | 444 | |
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[559] | 445 | This group contains the algorithms for finding minimum cut in graphs. |
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[40] | 446 | |
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[406] | 447 | The \e minimum \e cut \e problem is to find a non-empty and non-complete |
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| 448 | \f$X\f$ subset of the nodes with minimum overall capacity on |
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| 449 | outgoing arcs. Formally, there is a \f$G=(V,A)\f$ digraph, a |
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| 450 | \f$cap: A\rightarrow\mathbf{R}^+_0\f$ capacity function. The minimum |
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[50] | 451 | cut is the \f$X\f$ solution of the next optimization problem: |
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[40] | 452 | |
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[210] | 453 | \f[ \min_{X \subset V, X\not\in \{\emptyset, V\}} |
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[713] | 454 | \sum_{uv\in A: u\in X, v\not\in X}cap(uv) \f] |
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[40] | 455 | |
---|
[50] | 456 | LEMON contains several algorithms related to minimum cut problems: |
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[40] | 457 | |
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[406] | 458 | - \ref HaoOrlin "Hao-Orlin algorithm" for calculating minimum cut |
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| 459 | in directed graphs. |
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| 460 | - \ref NagamochiIbaraki "Nagamochi-Ibaraki algorithm" for |
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| 461 | calculating minimum cut in undirected graphs. |
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[559] | 462 | - \ref GomoryHu "Gomory-Hu tree computation" for calculating |
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[406] | 463 | all-pairs minimum cut in undirected graphs. |
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[40] | 464 | |
---|
| 465 | If you want to find minimum cut just between two distinict nodes, |
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[406] | 466 | see the \ref max_flow "maximum flow problem". |
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[40] | 467 | */ |
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| 468 | |
---|
| 469 | /** |
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[768] | 470 | @defgroup min_mean_cycle Minimum Mean Cycle Algorithms |
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[40] | 471 | @ingroup algs |
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[768] | 472 | \brief Algorithms for finding minimum mean cycles. |
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[40] | 473 | |
---|
[771] | 474 | This group contains the algorithms for finding minimum mean cycles |
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[1053] | 475 | \cite amo93networkflows, \cite karp78characterization. |
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[40] | 476 | |
---|
[768] | 477 | The \e minimum \e mean \e cycle \e problem is to find a directed cycle |
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| 478 | of minimum mean length (cost) in a digraph. |
---|
| 479 | The mean length of a cycle is the average length of its arcs, i.e. the |
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| 480 | ratio between the total length of the cycle and the number of arcs on it. |
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[40] | 481 | |
---|
[768] | 482 | This problem has an important connection to \e conservative \e length |
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| 483 | \e functions, too. A length function on the arcs of a digraph is called |
---|
| 484 | conservative if and only if there is no directed cycle of negative total |
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| 485 | length. For an arbitrary length function, the negative of the minimum |
---|
| 486 | cycle mean is the smallest \f$\epsilon\f$ value so that increasing the |
---|
| 487 | arc lengths uniformly by \f$\epsilon\f$ results in a conservative length |
---|
| 488 | function. |
---|
[40] | 489 | |
---|
[768] | 490 | LEMON contains three algorithms for solving the minimum mean cycle problem: |
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[1053] | 491 | - \ref KarpMmc Karp's original algorithm \cite karp78characterization. |
---|
[879] | 492 | - \ref HartmannOrlinMmc Hartmann-Orlin's algorithm, which is an improved |
---|
[1053] | 493 | version of Karp's algorithm \cite hartmann93finding. |
---|
[879] | 494 | - \ref HowardMmc Howard's policy iteration algorithm |
---|
[1053] | 495 | \cite dasdan98minmeancycle, \cite dasdan04experimental. |
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[40] | 496 | |
---|
[919] | 497 | In practice, the \ref HowardMmc "Howard" algorithm turned out to be by far the |
---|
[879] | 498 | most efficient one, though the best known theoretical bound on its running |
---|
| 499 | time is exponential. |
---|
| 500 | Both \ref KarpMmc "Karp" and \ref HartmannOrlinMmc "Hartmann-Orlin" algorithms |
---|
[1080] | 501 | run in time O(nm) and use space O(n<sup>2</sup>+m). |
---|
[40] | 502 | */ |
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| 503 | |
---|
| 504 | /** |
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[314] | 505 | @defgroup matching Matching Algorithms |
---|
[40] | 506 | @ingroup algs |
---|
[50] | 507 | \brief Algorithms for finding matchings in graphs and bipartite graphs. |
---|
[40] | 508 | |
---|
[590] | 509 | This group contains the algorithms for calculating |
---|
[40] | 510 | matchings in graphs and bipartite graphs. The general matching problem is |
---|
[590] | 511 | finding a subset of the edges for which each node has at most one incident |
---|
| 512 | edge. |
---|
[209] | 513 | |
---|
[40] | 514 | There are several different algorithms for calculate matchings in |
---|
| 515 | graphs. The matching problems in bipartite graphs are generally |
---|
| 516 | easier than in general graphs. The goal of the matching optimization |
---|
[406] | 517 | can be finding maximum cardinality, maximum weight or minimum cost |
---|
[40] | 518 | matching. The search can be constrained to find perfect or |
---|
| 519 | maximum cardinality matching. |
---|
| 520 | |
---|
[406] | 521 | The matching algorithms implemented in LEMON: |
---|
| 522 | - \ref MaxBipartiteMatching Hopcroft-Karp augmenting path algorithm |
---|
| 523 | for calculating maximum cardinality matching in bipartite graphs. |
---|
| 524 | - \ref PrBipartiteMatching Push-relabel algorithm |
---|
| 525 | for calculating maximum cardinality matching in bipartite graphs. |
---|
| 526 | - \ref MaxWeightedBipartiteMatching |
---|
| 527 | Successive shortest path algorithm for calculating maximum weighted |
---|
| 528 | matching and maximum weighted bipartite matching in bipartite graphs. |
---|
| 529 | - \ref MinCostMaxBipartiteMatching |
---|
| 530 | Successive shortest path algorithm for calculating minimum cost maximum |
---|
| 531 | matching in bipartite graphs. |
---|
| 532 | - \ref MaxMatching Edmond's blossom shrinking algorithm for calculating |
---|
| 533 | maximum cardinality matching in general graphs. |
---|
| 534 | - \ref MaxWeightedMatching Edmond's blossom shrinking algorithm for calculating |
---|
| 535 | maximum weighted matching in general graphs. |
---|
| 536 | - \ref MaxWeightedPerfectMatching |
---|
| 537 | Edmond's blossom shrinking algorithm for calculating maximum weighted |
---|
| 538 | perfect matching in general graphs. |
---|
[869] | 539 | - \ref MaxFractionalMatching Push-relabel algorithm for calculating |
---|
| 540 | maximum cardinality fractional matching in general graphs. |
---|
| 541 | - \ref MaxWeightedFractionalMatching Augmenting path algorithm for calculating |
---|
| 542 | maximum weighted fractional matching in general graphs. |
---|
| 543 | - \ref MaxWeightedPerfectFractionalMatching |
---|
| 544 | Augmenting path algorithm for calculating maximum weighted |
---|
| 545 | perfect fractional matching in general graphs. |
---|
[40] | 546 | |
---|
[865] | 547 | \image html matching.png |
---|
[873] | 548 | \image latex matching.eps "Min Cost Perfect Matching" width=\textwidth |
---|
[40] | 549 | */ |
---|
| 550 | |
---|
| 551 | /** |
---|
[714] | 552 | @defgroup graph_properties Connectivity and Other Graph Properties |
---|
[40] | 553 | @ingroup algs |
---|
[714] | 554 | \brief Algorithms for discovering the graph properties |
---|
[40] | 555 | |
---|
[714] | 556 | This group contains the algorithms for discovering the graph properties |
---|
| 557 | like connectivity, bipartiteness, euler property, simplicity etc. |
---|
| 558 | |
---|
| 559 | \image html connected_components.png |
---|
| 560 | \image latex connected_components.eps "Connected components" width=\textwidth |
---|
| 561 | */ |
---|
| 562 | |
---|
| 563 | /** |
---|
[1142] | 564 | @defgroup graph_isomorphism Graph Isomorphism |
---|
| 565 | @ingroup algs |
---|
| 566 | \brief Algorithms for testing (sub)graph isomorphism |
---|
| 567 | |
---|
| 568 | This group contains algorithms for finding isomorph copies of a |
---|
| 569 | given graph in another one, or simply check whether two graphs are isomorphic. |
---|
| 570 | |
---|
| 571 | The formal definition of subgraph isomorphism is as follows. |
---|
| 572 | |
---|
| 573 | We are given two graphs, \f$G_1=(V_1,E_1)\f$ and \f$G_2=(V_2,E_2)\f$. A |
---|
| 574 | function \f$f:V_1\longrightarrow V_2\f$ is called \e mapping or \e |
---|
| 575 | embedding if \f$f(u)\neq f(v)\f$ whenever \f$u\neq v\f$. |
---|
| 576 | |
---|
| 577 | The standard <em>Subgraph Isomorphism Problem (SIP)</em> looks for a |
---|
| 578 | mapping with the property that whenever \f$(u,v)\in E_1\f$, then |
---|
| 579 | \f$(f(u),f(v))\in E_2\f$. |
---|
| 580 | |
---|
| 581 | In case of <em>Induced Subgraph Isomorphism Problem (ISIP)</em> one |
---|
| 582 | also requires that if \f$(u,v)\not\in E_1\f$, then \f$(f(u),f(v))\not\in |
---|
| 583 | E_2\f$ |
---|
| 584 | |
---|
| 585 | In addition, the graph nodes may be \e labeled, i.e. we are given two |
---|
| 586 | node labelings \f$l_1:V_1\longrightarrow L\f$ and \f$l_2:V_2\longrightarrow |
---|
| 587 | L\f$ and we require that \f$l_1(u)=l_2(f(u))\f$ holds for all nodes \f$u \in |
---|
[1152] | 588 | G_1\f$. |
---|
[1142] | 589 | |
---|
| 590 | */ |
---|
| 591 | |
---|
| 592 | /** |
---|
[919] | 593 | @defgroup planar Planar Embedding and Drawing |
---|
[714] | 594 | @ingroup algs |
---|
| 595 | \brief Algorithms for planarity checking, embedding and drawing |
---|
| 596 | |
---|
| 597 | This group contains the algorithms for planarity checking, |
---|
| 598 | embedding and drawing. |
---|
| 599 | |
---|
| 600 | \image html planar.png |
---|
| 601 | \image latex planar.eps "Plane graph" width=\textwidth |
---|
| 602 | */ |
---|
[1092] | 603 | |
---|
[1032] | 604 | /** |
---|
| 605 | @defgroup tsp Traveling Salesman Problem |
---|
| 606 | @ingroup algs |
---|
| 607 | \brief Algorithms for the symmetric traveling salesman problem |
---|
| 608 | |
---|
| 609 | This group contains basic heuristic algorithms for the the symmetric |
---|
| 610 | \e traveling \e salesman \e problem (TSP). |
---|
| 611 | Given an \ref FullGraph "undirected full graph" with a cost map on its edges, |
---|
| 612 | the problem is to find a shortest possible tour that visits each node exactly |
---|
| 613 | once (i.e. the minimum cost Hamiltonian cycle). |
---|
| 614 | |
---|
[1034] | 615 | These TSP algorithms are intended to be used with a \e metric \e cost |
---|
| 616 | \e function, i.e. the edge costs should satisfy the triangle inequality. |
---|
| 617 | Otherwise the algorithms could yield worse results. |
---|
[1032] | 618 | |
---|
| 619 | LEMON provides five well-known heuristics for solving symmetric TSP: |
---|
| 620 | - \ref NearestNeighborTsp Neareast neighbor algorithm |
---|
| 621 | - \ref GreedyTsp Greedy algorithm |
---|
| 622 | - \ref InsertionTsp Insertion heuristic (with four selection methods) |
---|
| 623 | - \ref ChristofidesTsp Christofides algorithm |
---|
| 624 | - \ref Opt2Tsp 2-opt algorithm |
---|
| 625 | |
---|
[1036] | 626 | \ref NearestNeighborTsp, \ref GreedyTsp, and \ref InsertionTsp are the fastest |
---|
| 627 | solution methods. Furthermore, \ref InsertionTsp is usually quite effective. |
---|
| 628 | |
---|
| 629 | \ref ChristofidesTsp is somewhat slower, but it has the best guaranteed |
---|
| 630 | approximation factor: 3/2. |
---|
| 631 | |
---|
| 632 | \ref Opt2Tsp usually provides the best results in practice, but |
---|
| 633 | it is the slowest method. It can also be used to improve given tours, |
---|
| 634 | for example, the results of other algorithms. |
---|
| 635 | |
---|
[1032] | 636 | \image html tsp.png |
---|
| 637 | \image latex tsp.eps "Traveling salesman problem" width=\textwidth |
---|
| 638 | */ |
---|
[714] | 639 | |
---|
| 640 | /** |
---|
[904] | 641 | @defgroup approx_algs Approximation Algorithms |
---|
[714] | 642 | @ingroup algs |
---|
| 643 | \brief Approximation algorithms. |
---|
| 644 | |
---|
| 645 | This group contains the approximation and heuristic algorithms |
---|
| 646 | implemented in LEMON. |
---|
[904] | 647 | |
---|
| 648 | <b>Maximum Clique Problem</b> |
---|
| 649 | - \ref GrossoLocatelliPullanMc An efficient heuristic algorithm of |
---|
| 650 | Grosso, Locatelli, and Pullan. |
---|
[40] | 651 | */ |
---|
| 652 | |
---|
| 653 | /** |
---|
[314] | 654 | @defgroup auxalg Auxiliary Algorithms |
---|
[40] | 655 | @ingroup algs |
---|
[50] | 656 | \brief Auxiliary algorithms implemented in LEMON. |
---|
[40] | 657 | |
---|
[559] | 658 | This group contains some algorithms implemented in LEMON |
---|
[50] | 659 | in order to make it easier to implement complex algorithms. |
---|
[40] | 660 | */ |
---|
| 661 | |
---|
| 662 | /** |
---|
| 663 | @defgroup gen_opt_group General Optimization Tools |
---|
[559] | 664 | \brief This group contains some general optimization frameworks |
---|
[40] | 665 | implemented in LEMON. |
---|
| 666 | |
---|
[559] | 667 | This group contains some general optimization frameworks |
---|
[40] | 668 | implemented in LEMON. |
---|
| 669 | */ |
---|
| 670 | |
---|
| 671 | /** |
---|
[755] | 672 | @defgroup lp_group LP and MIP Solvers |
---|
[40] | 673 | @ingroup gen_opt_group |
---|
[755] | 674 | \brief LP and MIP solver interfaces for LEMON. |
---|
[40] | 675 | |
---|
[755] | 676 | This group contains LP and MIP solver interfaces for LEMON. |
---|
| 677 | Various LP solvers could be used in the same manner with this |
---|
| 678 | high-level interface. |
---|
| 679 | |
---|
[1053] | 680 | The currently supported solvers are \cite glpk, \cite clp, \cite cbc, |
---|
| 681 | \cite cplex, \cite soplex. |
---|
[40] | 682 | */ |
---|
| 683 | |
---|
[209] | 684 | /** |
---|
[314] | 685 | @defgroup lp_utils Tools for Lp and Mip Solvers |
---|
[40] | 686 | @ingroup lp_group |
---|
[50] | 687 | \brief Helper tools to the Lp and Mip solvers. |
---|
[40] | 688 | |
---|
| 689 | This group adds some helper tools to general optimization framework |
---|
| 690 | implemented in LEMON. |
---|
| 691 | */ |
---|
| 692 | |
---|
| 693 | /** |
---|
| 694 | @defgroup metah Metaheuristics |
---|
| 695 | @ingroup gen_opt_group |
---|
| 696 | \brief Metaheuristics for LEMON library. |
---|
| 697 | |
---|
[559] | 698 | This group contains some metaheuristic optimization tools. |
---|
[40] | 699 | */ |
---|
| 700 | |
---|
| 701 | /** |
---|
[209] | 702 | @defgroup utils Tools and Utilities |
---|
[50] | 703 | \brief Tools and utilities for programming in LEMON |
---|
[40] | 704 | |
---|
[50] | 705 | Tools and utilities for programming in LEMON. |
---|
[40] | 706 | */ |
---|
| 707 | |
---|
| 708 | /** |
---|
| 709 | @defgroup gutils Basic Graph Utilities |
---|
| 710 | @ingroup utils |
---|
[50] | 711 | \brief Simple basic graph utilities. |
---|
[40] | 712 | |
---|
[559] | 713 | This group contains some simple basic graph utilities. |
---|
[40] | 714 | */ |
---|
| 715 | |
---|
| 716 | /** |
---|
| 717 | @defgroup misc Miscellaneous Tools |
---|
| 718 | @ingroup utils |
---|
[50] | 719 | \brief Tools for development, debugging and testing. |
---|
| 720 | |
---|
[559] | 721 | This group contains several useful tools for development, |
---|
[40] | 722 | debugging and testing. |
---|
| 723 | */ |
---|
| 724 | |
---|
| 725 | /** |
---|
[314] | 726 | @defgroup timecount Time Measuring and Counting |
---|
[40] | 727 | @ingroup misc |
---|
[50] | 728 | \brief Simple tools for measuring the performance of algorithms. |
---|
| 729 | |
---|
[559] | 730 | This group contains simple tools for measuring the performance |
---|
[40] | 731 | of algorithms. |
---|
| 732 | */ |
---|
| 733 | |
---|
| 734 | /** |
---|
| 735 | @defgroup exceptions Exceptions |
---|
| 736 | @ingroup utils |
---|
[50] | 737 | \brief Exceptions defined in LEMON. |
---|
| 738 | |
---|
[559] | 739 | This group contains the exceptions defined in LEMON. |
---|
[40] | 740 | */ |
---|
| 741 | |
---|
| 742 | /** |
---|
| 743 | @defgroup io_group Input-Output |
---|
[50] | 744 | \brief Graph Input-Output methods |
---|
[40] | 745 | |
---|
[559] | 746 | This group contains the tools for importing and exporting graphs |
---|
[314] | 747 | and graph related data. Now it supports the \ref lgf-format |
---|
| 748 | "LEMON Graph Format", the \c DIMACS format and the encapsulated |
---|
| 749 | postscript (EPS) format. |
---|
[40] | 750 | */ |
---|
| 751 | |
---|
| 752 | /** |
---|
[351] | 753 | @defgroup lemon_io LEMON Graph Format |
---|
[40] | 754 | @ingroup io_group |
---|
[314] | 755 | \brief Reading and writing LEMON Graph Format. |
---|
[40] | 756 | |
---|
[559] | 757 | This group contains methods for reading and writing |
---|
[236] | 758 | \ref lgf-format "LEMON Graph Format". |
---|
[40] | 759 | */ |
---|
| 760 | |
---|
| 761 | /** |
---|
[314] | 762 | @defgroup eps_io Postscript Exporting |
---|
[40] | 763 | @ingroup io_group |
---|
| 764 | \brief General \c EPS drawer and graph exporter |
---|
| 765 | |
---|
[559] | 766 | This group contains general \c EPS drawing methods and special |
---|
[209] | 767 | graph exporting tools. |
---|
[1050] | 768 | |
---|
| 769 | \image html graph_to_eps.png |
---|
[40] | 770 | */ |
---|
| 771 | |
---|
| 772 | /** |
---|
[714] | 773 | @defgroup dimacs_group DIMACS Format |
---|
[388] | 774 | @ingroup io_group |
---|
| 775 | \brief Read and write files in DIMACS format |
---|
| 776 | |
---|
| 777 | Tools to read a digraph from or write it to a file in DIMACS format data. |
---|
| 778 | */ |
---|
| 779 | |
---|
| 780 | /** |
---|
[351] | 781 | @defgroup nauty_group NAUTY Format |
---|
| 782 | @ingroup io_group |
---|
| 783 | \brief Read \e Nauty format |
---|
[388] | 784 | |
---|
[351] | 785 | Tool to read graphs from \e Nauty format data. |
---|
| 786 | */ |
---|
| 787 | |
---|
| 788 | /** |
---|
[40] | 789 | @defgroup concept Concepts |
---|
| 790 | \brief Skeleton classes and concept checking classes |
---|
| 791 | |
---|
[559] | 792 | This group contains the data/algorithm skeletons and concept checking |
---|
[40] | 793 | classes implemented in LEMON. |
---|
| 794 | |
---|
| 795 | The purpose of the classes in this group is fourfold. |
---|
[209] | 796 | |
---|
[318] | 797 | - These classes contain the documentations of the %concepts. In order |
---|
[40] | 798 | to avoid document multiplications, an implementation of a concept |
---|
| 799 | simply refers to the corresponding concept class. |
---|
| 800 | |
---|
| 801 | - These classes declare every functions, <tt>typedef</tt>s etc. an |
---|
[318] | 802 | implementation of the %concepts should provide, however completely |
---|
[40] | 803 | without implementations and real data structures behind the |
---|
| 804 | interface. On the other hand they should provide nothing else. All |
---|
| 805 | the algorithms working on a data structure meeting a certain concept |
---|
| 806 | should compile with these classes. (Though it will not run properly, |
---|
| 807 | of course.) In this way it is easily to check if an algorithm |
---|
| 808 | doesn't use any extra feature of a certain implementation. |
---|
| 809 | |
---|
| 810 | - The concept descriptor classes also provide a <em>checker class</em> |
---|
[50] | 811 | that makes it possible to check whether a certain implementation of a |
---|
[40] | 812 | concept indeed provides all the required features. |
---|
| 813 | |
---|
| 814 | - Finally, They can serve as a skeleton of a new implementation of a concept. |
---|
| 815 | */ |
---|
| 816 | |
---|
| 817 | /** |
---|
| 818 | @defgroup graph_concepts Graph Structure Concepts |
---|
| 819 | @ingroup concept |
---|
| 820 | \brief Skeleton and concept checking classes for graph structures |
---|
| 821 | |
---|
[735] | 822 | This group contains the skeletons and concept checking classes of |
---|
| 823 | graph structures. |
---|
[40] | 824 | */ |
---|
| 825 | |
---|
[314] | 826 | /** |
---|
| 827 | @defgroup map_concepts Map Concepts |
---|
| 828 | @ingroup concept |
---|
| 829 | \brief Skeleton and concept checking classes for maps |
---|
| 830 | |
---|
[559] | 831 | This group contains the skeletons and concept checking classes of maps. |
---|
[40] | 832 | */ |
---|
| 833 | |
---|
| 834 | /** |
---|
[714] | 835 | @defgroup tools Standalone Utility Applications |
---|
| 836 | |
---|
| 837 | Some utility applications are listed here. |
---|
| 838 | |
---|
| 839 | The standard compilation procedure (<tt>./configure;make</tt>) will compile |
---|
| 840 | them, as well. |
---|
| 841 | */ |
---|
| 842 | |
---|
| 843 | /** |
---|
[40] | 844 | \anchor demoprograms |
---|
| 845 | |
---|
[406] | 846 | @defgroup demos Demo Programs |
---|
[40] | 847 | |
---|
| 848 | Some demo programs are listed here. Their full source codes can be found in |
---|
| 849 | the \c demo subdirectory of the source tree. |
---|
| 850 | |
---|
[564] | 851 | In order to compile them, use the <tt>make demo</tt> or the |
---|
| 852 | <tt>make check</tt> commands. |
---|
[40] | 853 | */ |
---|
| 854 | |
---|
[406] | 855 | } |
---|