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1 /* glpqmd.c (quotient minimum degree algorithm) */ |
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2 |
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3 /*********************************************************************** |
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4 * This code is part of GLPK (GNU Linear Programming Kit). |
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5 * |
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6 * THIS CODE IS THE RESULT OF TRANSLATION OF THE FORTRAN SUBROUTINES |
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7 * GENQMD, QMDRCH, QMDQT, QMDUPD, AND QMDMRG FROM THE BOOK: |
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8 * |
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9 * ALAN GEORGE, JOSEPH W-H LIU. COMPUTER SOLUTION OF LARGE SPARSE |
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10 * POSITIVE DEFINITE SYSTEMS. PRENTICE-HALL, 1981. |
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11 * |
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12 * THE TRANSLATION HAS BEEN DONE WITH THE PERMISSION OF THE AUTHORS |
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13 * OF THE ORIGINAL FORTRAN SUBROUTINES: ALAN GEORGE AND JOSEPH LIU, |
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14 * UNIVERSITY OF WATERLOO, WATERLOO, ONTARIO, CANADA. |
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15 * |
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16 * The translation was made by Andrew Makhorin <mao@gnu.org>. |
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17 * |
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18 * GLPK is free software: you can redistribute it and/or modify it |
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19 * under the terms of the GNU General Public License as published by |
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20 * the Free Software Foundation, either version 3 of the License, or |
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21 * (at your option) any later version. |
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22 * |
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23 * GLPK is distributed in the hope that it will be useful, but WITHOUT |
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24 * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY |
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25 * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public |
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26 * License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with GLPK. If not, see <http://www.gnu.org/licenses/>. |
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30 ***********************************************************************/ |
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31 |
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32 #include "glpqmd.h" |
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33 |
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34 /*********************************************************************** |
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35 * NAME |
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36 * |
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37 * genqmd - GENeral Quotient Minimum Degree algorithm |
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38 * |
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39 * SYNOPSIS |
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40 * |
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41 * #include "glpqmd.h" |
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42 * void genqmd(int *neqns, int xadj[], int adjncy[], int perm[], |
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43 * int invp[], int deg[], int marker[], int rchset[], int nbrhd[], |
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44 * int qsize[], int qlink[], int *nofsub); |
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45 * |
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46 * PURPOSE |
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47 * |
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48 * This routine implements the minimum degree algorithm. It makes use |
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49 * of the implicit representation of the elimination graph by quotient |
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50 * graphs, and the notion of indistinguishable nodes. |
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51 * |
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52 * CAUTION |
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53 * |
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54 * The adjancy vector adjncy will be destroyed. |
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55 * |
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56 * INPUT PARAMETERS |
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57 * |
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58 * neqns - number of equations; |
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59 * (xadj, adjncy) - |
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60 * the adjancy structure. |
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61 * |
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62 * OUTPUT PARAMETERS |
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63 * |
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64 * perm - the minimum degree ordering; |
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65 * invp - the inverse of perm. |
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66 * |
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67 * WORKING PARAMETERS |
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68 * |
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69 * deg - the degree vector. deg[i] is negative means node i has been |
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70 * numbered; |
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71 * marker - a marker vector, where marker[i] is negative means node i |
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72 * has been merged with another nodeand thus can be ignored; |
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73 * rchset - vector used for the reachable set; |
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74 * nbrhd - vector used for neighborhood set; |
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75 * qsize - vector used to store the size of indistinguishable |
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76 * supernodes; |
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77 * qlink - vector used to store indistinguishable nodes, i, qlink[i], |
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78 * qlink[qlink[i]], ... are the members of the supernode |
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79 * represented by i. |
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80 * |
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81 * PROGRAM SUBROUTINES |
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82 * |
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83 * qmdrch, qmdqt, qmdupd. |
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84 ***********************************************************************/ |
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85 |
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86 void genqmd(int *_neqns, int xadj[], int adjncy[], int perm[], |
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87 int invp[], int deg[], int marker[], int rchset[], int nbrhd[], |
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88 int qsize[], int qlink[], int *_nofsub) |
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89 { int inode, ip, irch, j, mindeg, ndeg, nhdsze, node, np, num, |
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90 nump1, nxnode, rchsze, search, thresh; |
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91 # define neqns (*_neqns) |
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92 # define nofsub (*_nofsub) |
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93 /* Initialize degree vector and other working variables. */ |
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94 mindeg = neqns; |
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95 nofsub = 0; |
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96 for (node = 1; node <= neqns; node++) |
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97 { perm[node] = node; |
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98 invp[node] = node; |
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99 marker[node] = 0; |
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100 qsize[node] = 1; |
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101 qlink[node] = 0; |
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102 ndeg = xadj[node+1] - xadj[node]; |
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103 deg[node] = ndeg; |
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104 if (ndeg < mindeg) mindeg = ndeg; |
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105 } |
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106 num = 0; |
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107 /* Perform threshold search to get a node of min degree. |
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108 Variable search point to where search should start. */ |
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109 s200: search = 1; |
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110 thresh = mindeg; |
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111 mindeg = neqns; |
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112 s300: nump1 = num + 1; |
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113 if (nump1 > search) search = nump1; |
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114 for (j = search; j <= neqns; j++) |
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115 { node = perm[j]; |
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116 if (marker[node] >= 0) |
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117 { ndeg = deg[node]; |
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118 if (ndeg <= thresh) goto s500; |
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119 if (ndeg < mindeg) mindeg = ndeg; |
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120 } |
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121 } |
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122 goto s200; |
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123 /* Node has minimum degree. Find its reachable sets by calling |
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124 qmdrch. */ |
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125 s500: search = j; |
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126 nofsub += deg[node]; |
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127 marker[node] = 1; |
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128 qmdrch(&node, xadj, adjncy, deg, marker, &rchsze, rchset, &nhdsze, |
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129 nbrhd); |
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130 /* Eliminate all nodes indistinguishable from node. They are given |
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131 by node, qlink[node], ... . */ |
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132 nxnode = node; |
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133 s600: num++; |
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134 np = invp[nxnode]; |
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135 ip = perm[num]; |
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136 perm[np] = ip; |
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137 invp[ip] = np; |
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138 perm[num] = nxnode; |
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139 invp[nxnode] = num; |
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140 deg[nxnode] = -1; |
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141 nxnode = qlink[nxnode]; |
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142 if (nxnode > 0) goto s600; |
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143 if (rchsze > 0) |
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144 { /* Update the degrees of the nodes in the reachable set and |
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145 identify indistinguishable nodes. */ |
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146 qmdupd(xadj, adjncy, &rchsze, rchset, deg, qsize, qlink, |
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147 marker, &rchset[rchsze+1], &nbrhd[nhdsze+1]); |
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148 /* Reset marker value of nodes in reach set. Update threshold |
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149 value for cyclic search. Also call qmdqt to form new |
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150 quotient graph. */ |
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151 marker[node] = 0; |
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152 for (irch = 1; irch <= rchsze; irch++) |
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153 { inode = rchset[irch]; |
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154 if (marker[inode] >= 0) |
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155 { marker[inode] = 0; |
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156 ndeg = deg[inode]; |
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157 if (ndeg < mindeg) mindeg = ndeg; |
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158 if (ndeg <= thresh) |
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159 { mindeg = thresh; |
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160 thresh = ndeg; |
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161 search = invp[inode]; |
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162 } |
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163 } |
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164 } |
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165 if (nhdsze > 0) |
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166 qmdqt(&node, xadj, adjncy, marker, &rchsze, rchset, nbrhd); |
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167 } |
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168 if (num < neqns) goto s300; |
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169 return; |
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170 # undef neqns |
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171 # undef nofsub |
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172 } |
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173 |
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174 /*********************************************************************** |
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175 * NAME |
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176 * |
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177 * qmdrch - Quotient MD ReaCHable set |
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178 * |
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179 * SYNOPSIS |
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180 * |
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181 * #include "glpqmd.h" |
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182 * void qmdrch(int *root, int xadj[], int adjncy[], int deg[], |
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183 * int marker[], int *rchsze, int rchset[], int *nhdsze, |
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184 * int nbrhd[]); |
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185 * |
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186 * PURPOSE |
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187 * |
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188 * This subroutine determines the reachable set of a node through a |
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189 * given subset. The adjancy structure is assumed to be stored in a |
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190 * quotient graph format. |
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191 * |
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192 * INPUT PARAMETERS |
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193 * |
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194 * root - the given node not in the subset; |
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195 * (xadj, adjncy) - |
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196 * the adjancy structure pair; |
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197 * deg - the degree vector. deg[i] < 0 means the node belongs to the |
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198 * given subset. |
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199 * |
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200 * OUTPUT PARAMETERS |
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201 * |
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202 * (rchsze, rchset) - |
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203 * the reachable set; |
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204 * (nhdsze, nbrhd) - |
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205 * the neighborhood set. |
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206 * |
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207 * UPDATED PARAMETERS |
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208 * |
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209 * marker - the marker vector for reach and nbrhd sets. > 0 means the |
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210 * node is in reach set. < 0 means the node has been merged |
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211 * with others in the quotient or it is in nbrhd set. |
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212 ***********************************************************************/ |
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213 |
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214 void qmdrch(int *_root, int xadj[], int adjncy[], int deg[], |
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215 int marker[], int *_rchsze, int rchset[], int *_nhdsze, |
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216 int nbrhd[]) |
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217 { int i, istop, istrt, j, jstop, jstrt, nabor, node; |
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218 # define root (*_root) |
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219 # define rchsze (*_rchsze) |
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220 # define nhdsze (*_nhdsze) |
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221 /* Loop through the neighbors of root in the quotient graph. */ |
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222 nhdsze = 0; |
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223 rchsze = 0; |
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224 istrt = xadj[root]; |
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225 istop = xadj[root+1] - 1; |
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226 if (istop < istrt) return; |
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227 for (i = istrt; i <= istop; i++) |
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228 { nabor = adjncy[i]; |
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229 if (nabor == 0) return; |
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230 if (marker[nabor] == 0) |
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231 { if (deg[nabor] >= 0) |
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232 { /* Include nabor into the reachable set. */ |
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233 rchsze++; |
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234 rchset[rchsze] = nabor; |
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235 marker[nabor] = 1; |
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236 goto s600; |
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237 } |
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238 /* nabor has been eliminated. Find nodes reachable from |
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239 it. */ |
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240 marker[nabor] = -1; |
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241 nhdsze++; |
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242 nbrhd[nhdsze] = nabor; |
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243 s300: jstrt = xadj[nabor]; |
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244 jstop = xadj[nabor+1] - 1; |
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245 for (j = jstrt; j <= jstop; j++) |
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246 { node = adjncy[j]; |
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247 nabor = - node; |
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248 if (node < 0) goto s300; |
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249 if (node == 0) goto s600; |
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250 if (marker[node] == 0) |
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251 { rchsze++; |
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252 rchset[rchsze] = node; |
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253 marker[node] = 1; |
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254 } |
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255 } |
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256 } |
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257 s600: ; |
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258 } |
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259 return; |
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260 # undef root |
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261 # undef rchsze |
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262 # undef nhdsze |
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263 } |
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264 |
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265 /*********************************************************************** |
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266 * NAME |
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267 * |
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268 * qmdqt - Quotient MD Quotient graph Transformation |
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269 * |
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270 * SYNOPSIS |
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271 * |
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272 * #include "glpqmd.h" |
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273 * void qmdqt(int *root, int xadj[], int adjncy[], int marker[], |
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274 * int *rchsze, int rchset[], int nbrhd[]); |
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275 * |
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276 * PURPOSE |
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277 * |
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278 * This subroutine performs the quotient graph transformation after a |
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279 * node has been eliminated. |
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280 * |
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281 * INPUT PARAMETERS |
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282 * |
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283 * root - the node just eliminated. It becomes the representative of |
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284 * the new supernode; |
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285 * (xadj, adjncy) - |
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286 * the adjancy structure; |
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287 * (rchsze, rchset) - |
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288 * the reachable set of root in the old quotient graph; |
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289 * nbrhd - the neighborhood set which will be merged with root to form |
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290 * the new supernode; |
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291 * marker - the marker vector. |
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292 * |
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293 * UPDATED PARAMETERS |
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294 * |
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295 * adjncy - becomes the adjncy of the quotient graph. |
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296 ***********************************************************************/ |
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297 |
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298 void qmdqt(int *_root, int xadj[], int adjncy[], int marker[], |
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299 int *_rchsze, int rchset[], int nbrhd[]) |
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300 { int inhd, irch, j, jstop, jstrt, link, nabor, node; |
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301 # define root (*_root) |
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302 # define rchsze (*_rchsze) |
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303 irch = 0; |
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304 inhd = 0; |
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305 node = root; |
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306 s100: jstrt = xadj[node]; |
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307 jstop = xadj[node+1] - 2; |
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308 if (jstop >= jstrt) |
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309 { /* Place reach nodes into the adjacent list of node. */ |
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310 for (j = jstrt; j <= jstop; j++) |
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311 { irch++; |
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312 adjncy[j] = rchset[irch]; |
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313 if (irch >= rchsze) goto s400; |
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314 } |
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315 } |
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316 /* Link to other space provided by the nbrhd set. */ |
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317 link = adjncy[jstop+1]; |
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318 node = - link; |
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319 if (link >= 0) |
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320 { inhd++; |
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321 node = nbrhd[inhd]; |
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322 adjncy[jstop+1] = - node; |
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323 } |
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324 goto s100; |
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325 /* All reachable nodes have been saved. End the adjacent list. |
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326 Add root to the neighborhood list of each node in the reach |
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327 set. */ |
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328 s400: adjncy[j+1] = 0; |
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329 for (irch = 1; irch <= rchsze; irch++) |
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330 { node = rchset[irch]; |
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331 if (marker[node] >= 0) |
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332 { jstrt = xadj[node]; |
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333 jstop = xadj[node+1] - 1; |
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334 for (j = jstrt; j <= jstop; j++) |
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335 { nabor = adjncy[j]; |
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336 if (marker[nabor] < 0) |
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337 { adjncy[j] = root; |
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338 goto s600; |
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339 } |
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340 } |
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341 } |
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342 s600: ; |
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343 } |
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344 return; |
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345 # undef root |
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346 # undef rchsze |
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347 } |
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348 |
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349 /*********************************************************************** |
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350 * NAME |
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351 * |
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352 * qmdupd - Quotient MD UPDate |
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353 * |
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354 * SYNOPSIS |
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355 * |
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356 * #include "glpqmd.h" |
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357 * void qmdupd(int xadj[], int adjncy[], int *nlist, int list[], |
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358 * int deg[], int qsize[], int qlink[], int marker[], int rchset[], |
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359 * int nbrhd[]); |
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360 * |
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361 * PURPOSE |
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362 * |
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363 * This routine performs degree update for a set of nodes in the minimum |
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364 * degree algorithm. |
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365 * |
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366 * INPUT PARAMETERS |
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367 * |
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368 * (xadj, adjncy) - |
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369 * the adjancy structure; |
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370 * (nlist, list) - |
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371 * the list of nodes whose degree has to be updated. |
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372 * |
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373 * UPDATED PARAMETERS |
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374 * |
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375 * deg - the degree vector; |
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376 * qsize - size of indistinguishable supernodes; |
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377 * qlink - linked list for indistinguishable nodes; |
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378 * marker - used to mark those nodes in reach/nbrhd sets. |
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379 * |
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380 * WORKING PARAMETERS |
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381 * |
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382 * rchset - the reachable set; |
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383 * nbrhd - the neighborhood set. |
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384 * |
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385 * PROGRAM SUBROUTINES |
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386 * |
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387 * qmdmrg. |
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388 ***********************************************************************/ |
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389 |
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390 void qmdupd(int xadj[], int adjncy[], int *_nlist, int list[], |
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391 int deg[], int qsize[], int qlink[], int marker[], int rchset[], |
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392 int nbrhd[]) |
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393 { int deg0, deg1, il, inhd, inode, irch, j, jstop, jstrt, mark, |
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394 nabor, nhdsze, node, rchsze; |
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395 # define nlist (*_nlist) |
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396 /* Find all eliminated supernodes that are adjacent to some nodes |
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397 in the given list. Put them into (nhdsze, nbrhd). deg0 contains |
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398 the number of nodes in the list. */ |
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399 if (nlist <= 0) return; |
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400 deg0 = 0; |
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401 nhdsze = 0; |
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402 for (il = 1; il <= nlist; il++) |
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403 { node = list[il]; |
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404 deg0 += qsize[node]; |
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405 jstrt = xadj[node]; |
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406 jstop = xadj[node+1] - 1; |
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407 for (j = jstrt; j <= jstop; j++) |
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408 { nabor = adjncy[j]; |
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409 if (marker[nabor] == 0 && deg[nabor] < 0) |
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410 { marker[nabor] = -1; |
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411 nhdsze++; |
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412 nbrhd[nhdsze] = nabor; |
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413 } |
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414 } |
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415 } |
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416 /* Merge indistinguishable nodes in the list by calling the |
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417 subroutine qmdmrg. */ |
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418 if (nhdsze > 0) |
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419 qmdmrg(xadj, adjncy, deg, qsize, qlink, marker, °0, &nhdsze, |
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420 nbrhd, rchset, &nbrhd[nhdsze+1]); |
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421 /* Find the new degrees of the nodes that have not been merged. */ |
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422 for (il = 1; il <= nlist; il++) |
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423 { node = list[il]; |
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424 mark = marker[node]; |
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425 if (mark == 0 || mark == 1) |
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426 { marker[node] = 2; |
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427 qmdrch(&node, xadj, adjncy, deg, marker, &rchsze, rchset, |
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428 &nhdsze, nbrhd); |
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429 deg1 = deg0; |
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430 if (rchsze > 0) |
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431 { for (irch = 1; irch <= rchsze; irch++) |
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432 { inode = rchset[irch]; |
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433 deg1 += qsize[inode]; |
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434 marker[inode] = 0; |
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435 } |
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436 } |
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437 deg[node] = deg1 - 1; |
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438 if (nhdsze > 0) |
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439 { for (inhd = 1; inhd <= nhdsze; inhd++) |
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440 { inode = nbrhd[inhd]; |
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441 marker[inode] = 0; |
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442 } |
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443 } |
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444 } |
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445 } |
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446 return; |
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447 # undef nlist |
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448 } |
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449 |
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450 /*********************************************************************** |
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451 * NAME |
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452 * |
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453 * qmdmrg - Quotient MD MeRGe |
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454 * |
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455 * SYNOPSIS |
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456 * |
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457 * #include "qmdmrg.h" |
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458 * void qmdmrg(int xadj[], int adjncy[], int deg[], int qsize[], |
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459 * int qlink[], int marker[], int *deg0, int *nhdsze, int nbrhd[], |
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460 * int rchset[], int ovrlp[]); |
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461 * |
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462 * PURPOSE |
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463 * |
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464 * This routine merges indistinguishable nodes in the minimum degree |
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465 * ordering algorithm. It also computes the new degrees of these new |
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466 * supernodes. |
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467 * |
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468 * INPUT PARAMETERS |
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469 * |
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470 * (xadj, adjncy) - |
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471 * the adjancy structure; |
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472 * deg0 - the number of nodes in the given set; |
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473 * (nhdsze, nbrhd) - |
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474 * the set of eliminated supernodes adjacent to some nodes in |
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475 * the set. |
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476 * |
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477 * UPDATED PARAMETERS |
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478 * |
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479 * deg - the degree vector; |
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480 * qsize - size of indistinguishable nodes; |
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481 * qlink - linked list for indistinguishable nodes; |
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482 * marker - the given set is given by those nodes with marker value set |
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483 * to 1. Those nodes with degree updated will have marker value |
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484 * set to 2. |
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485 * |
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486 * WORKING PARAMETERS |
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487 * |
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488 * rchset - the reachable set; |
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489 * ovrlp - temp vector to store the intersection of two reachable sets. |
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490 ***********************************************************************/ |
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491 |
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492 void qmdmrg(int xadj[], int adjncy[], int deg[], int qsize[], |
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493 int qlink[], int marker[], int *_deg0, int *_nhdsze, int nbrhd[], |
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494 int rchset[], int ovrlp[]) |
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495 { int deg1, head, inhd, iov, irch, j, jstop, jstrt, link, lnode, |
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496 mark, mrgsze, nabor, node, novrlp, rchsze, root; |
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497 # define deg0 (*_deg0) |
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498 # define nhdsze (*_nhdsze) |
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499 /* Initialization. */ |
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500 if (nhdsze <= 0) return; |
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501 for (inhd = 1; inhd <= nhdsze; inhd++) |
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502 { root = nbrhd[inhd]; |
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503 marker[root] = 0; |
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504 } |
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505 /* Loop through each eliminated supernode in the set |
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506 (nhdsze, nbrhd). */ |
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507 for (inhd = 1; inhd <= nhdsze; inhd++) |
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508 { root = nbrhd[inhd]; |
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509 marker[root] = -1; |
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510 rchsze = 0; |
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511 novrlp = 0; |
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512 deg1 = 0; |
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513 s200: jstrt = xadj[root]; |
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514 jstop = xadj[root+1] - 1; |
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515 /* Determine the reachable set and its intersection with the |
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516 input reachable set. */ |
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517 for (j = jstrt; j <= jstop; j++) |
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518 { nabor = adjncy[j]; |
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519 root = - nabor; |
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520 if (nabor < 0) goto s200; |
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521 if (nabor == 0) break; |
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522 mark = marker[nabor]; |
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523 if (mark == 0) |
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524 { rchsze++; |
|
525 rchset[rchsze] = nabor; |
|
526 deg1 += qsize[nabor]; |
|
527 marker[nabor] = 1; |
|
528 } |
|
529 else if (mark == 1) |
|
530 { novrlp++; |
|
531 ovrlp[novrlp] = nabor; |
|
532 marker[nabor] = 2; |
|
533 } |
|
534 } |
|
535 /* From the overlapped set, determine the nodes that can be |
|
536 merged together. */ |
|
537 head = 0; |
|
538 mrgsze = 0; |
|
539 for (iov = 1; iov <= novrlp; iov++) |
|
540 { node = ovrlp[iov]; |
|
541 jstrt = xadj[node]; |
|
542 jstop = xadj[node+1] - 1; |
|
543 for (j = jstrt; j <= jstop; j++) |
|
544 { nabor = adjncy[j]; |
|
545 if (marker[nabor] == 0) |
|
546 { marker[node] = 1; |
|
547 goto s1100; |
|
548 } |
|
549 } |
|
550 /* Node belongs to the new merged supernode. Update the |
|
551 vectors qlink and qsize. */ |
|
552 mrgsze += qsize[node]; |
|
553 marker[node] = -1; |
|
554 lnode = node; |
|
555 s900: link = qlink[lnode]; |
|
556 if (link > 0) |
|
557 { lnode = link; |
|
558 goto s900; |
|
559 } |
|
560 qlink[lnode] = head; |
|
561 head = node; |
|
562 s1100: ; |
|
563 } |
|
564 if (head > 0) |
|
565 { qsize[head] = mrgsze; |
|
566 deg[head] = deg0 + deg1 - 1; |
|
567 marker[head] = 2; |
|
568 } |
|
569 /* Reset marker values. */ |
|
570 root = nbrhd[inhd]; |
|
571 marker[root] = 0; |
|
572 if (rchsze > 0) |
|
573 { for (irch = 1; irch <= rchsze; irch++) |
|
574 { node = rchset[irch]; |
|
575 marker[node] = 0; |
|
576 } |
|
577 } |
|
578 } |
|
579 return; |
|
580 # undef deg0 |
|
581 # undef nhdsze |
|
582 } |
|
583 |
|
584 /* eof */ |