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namespace lemon {
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/*!
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\page graph-io-page Graph Input-Output
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The standard graph IO enables one to store graphs and additional maps
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(i.e. functions on the nodes or edges) in a flexible and efficient way.
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Before you read this page you should be familiar with LEMON
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\ref graphs "graphs" and \ref maps-page "maps".
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\section format The general file format
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The file contains sections in the following order:
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\li nodeset
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\li edgeset
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\li nodes
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\li edges
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\li attributes
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Some of these sections can be omitted, but you will basicly need the nodeset
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section (unless your graph has no nodes at all) and the edgeset section
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(unless your graph has no edges at all).
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The nodeset section describes the nodes of your graph: it identifies the nodes
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and gives the maps defined on them, if any. It starts with the
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following line:
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<tt>\@nodeset</tt>
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The next line contains the names of the nodemaps, separated by whitespaces. Each
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following line describes a node in the graph: it contains the values of the
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maps in the right order. The map named "id" should contain unique values
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because it is regarded as an ID-map. These ids need not be numbers but they
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must identify the nodes uniquely for later reference. For example:
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\code
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@nodeset
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id x-coord y-coord color
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3 1.0 4.0 blue
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5 2.3 5.7 red
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12 7.8 2.3 green
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\endcode
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The edgeset section is very similar to the nodeset section, it has
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the same coloumn oriented structure. It starts with the line
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<tt>\@edgeset</tt>
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The next line contains the whitespace separated list of names of the edge
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maps. Each of the next lines describes one edge. The first two elements in
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the line are the IDs of the source and target (or tail and head) nodes of the
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edge as they occur in the ID node map of the nodeset section. You can also
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have an optional ID map on the edges for later reference (which has to be
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unique in this case).
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\code
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@edgeset
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id weight label
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3 5 a 4.3 a-edge
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5 12 c 2.6 c-edge
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3 12 g 3.4 g-edge
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\endcode
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The \e nodes section contains <em>labeled (distinguished) nodes</em>
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(i.e. nodes having a special
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label on them). The section starts with
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<tt> \@nodes </tt>
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Each of the next lines contains a label for a node in the graph
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and then the ID as described in the \e nodeset section.
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\code
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@nodes
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source 3
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target 12
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\endcode
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The last section describes the <em>labeled (distinguished) edges</em>
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(i.e. edges having a special label on them). It starts with \c \@edges
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and then each line contains the name of the edge and the ID.
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\code
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@edges
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observed c
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\endcode
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The file may contain empty lines and comment lines. The comment lines
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start with an \c # character.
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The attributes section can handle some information about the graph. It
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contains key-value pairs in each line (a key and the mapped value to key). The
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key should be a string without whitespaces, the value can be of various types.
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\code
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@attributes
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title "Four colored plan graph"
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author "Balazs DEZSO"
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copyright "Lemon Library"
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version 12
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\endcode
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<tt> \@end </tt>
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line.
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\section use Using graph input-output
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The graph input and output is based on <em> reading and writing
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commands</em>. The user gives reading and writing commands to the reader or
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writer class, then he calls the \c run() method that executes all the given
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commands.
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\subsection write Writing a graph
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The \ref lemon::GraphWriter "GraphWriter" template class
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provides the graph output. To write a graph
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you should first give writing commands to the writer. You can declare
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writing command as \c NodeMap or \c EdgeMap writing and labeled Node and
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Edge writing.
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\code
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GraphWriter<ListGraph> writer(std::cout, graph);
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\endcode
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The \ref lemon::GraphWriter::writeNodeMap() "writeNodeMap()"
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function declares a \c NodeMap writing command in the
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\ref lemon::GraphWriter "GraphWriter".
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You should give a name to the map and the map
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object as parameters. The NodeMap writing command with name "id" should write a
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unique map because it will be regarded as an ID map.
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\see IdMap, DescriptorMap
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\code
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IdMap<ListGraph, Node> nodeIdMap;
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writer.writeNodeMap("id", nodeIdMap);
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writer.writeNodeMap("x-coord", xCoordMap);
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writer.writeNodeMap("y-coord", yCoordMap);
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writer.writeNodeMap("color", colorMap);
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\endcode
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With the \ref lemon::GraphWriter::writeEdgeMap() "writeEdgeMap()"
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member function you can give an edge map
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writing command similar to the NodeMaps.
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\see IdMap, DescriptorMap
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\code
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DescriptorMap<ListGraph, Edge, ListGraph::EdgeMap<int> > edgeDescMap(graph);
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writer.writeEdgeMap("descriptor", edgeDescMap);
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writer.writeEdgeMap("weight", weightMap);
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writer.writeEdgeMap("label", labelMap);
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\endcode
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With \ref lemon::GraphWriter::writeNode() "writeNode()"
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and \ref lemon::GraphWriter::writeEdge() "writeEdge()"
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functions you can designate Nodes and
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Edges in the graph. For example, you can write out the source and target node
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of a maximum flow instance.
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\code
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writer.writeNode("source", sourceNode);
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writer.writeNode("target", targetNode);
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writer.writeEdge("observed", edge);
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\endcode
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With \ref lemon::GraphWriter::writeAttribute() "writeAttribute()"
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function you can write an attribute to the file.
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\code
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writer.writeAttribute("author", "Balazs DEZSO");
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writer.writeAttribute("version", 12);
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\endcode
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After you give all write commands you must call the
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\ref lemon::GraphWriter::run() "run()" member
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function, which executes all the writing commands.
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\code
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writer.run();
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\endcode
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\subsection reading Reading a graph
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The file to be read may contain several maps and labeled nodes or edges.
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If you read a graph you need not read all the maps and items just those
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that you need. The interface of the \ref lemon::GraphReader "GraphReader"
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is very similar to
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the \ref lemon::GraphWriter "GraphWriter"
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but the reading method does not depend on the order of the
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given commands.
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The reader object assumes that each not readed value does not contain
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whitespaces, therefore it has some extra possibilities to control how
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it should skip the values when the string representation contains spaces.
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\code
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GraphReader<ListGraph> reader(std::cin, graph);
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\endcode
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The \ref lemon::GraphReader::readNodeMap() "readNodeMap()"
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function reads a map from the \c nodeset section.
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If there is a map that you do not want to read from the file and there are
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whitespaces in the string represenation of the values then you should
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call the \ref lemon::GraphReader::skipNodeMap() "skipNodeMap()"
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template member function with proper parameters.
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\see QuotedStringReader
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\code
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reader.readNodeMap("x-coord", xCoordMap);
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reader.readNodeMap("y-coord", yCoordMap);
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reader.readNodeMap<QuotedStringReader>("label", labelMap);
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reader.skipNodeMap<QuotedStringReader>("description");
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reader.readNodeMap("color", colorMap);
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\endcode
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With the \ref lemon::GraphReader::readEdgeMap() "readEdgeMap()"
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member function you can give an edge map
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reading command similar to the NodeMaps.
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\code
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reader.readEdgeMap("weight", weightMap);
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reader.readEdgeMap("label", labelMap);
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\endcode
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With \ref lemon::GraphReader::readNode() "readNode()"
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and \ref lemon::GraphReader::readEdge() "readEdge()"
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functions you can read labeled Nodes and
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Edges.
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\code
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reader.readNode("source", sourceNode);
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reader.readNode("target", targetNode);
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reader.readEdge("observed", edge);
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\endcode
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With \ref lemon::GraphReader::readAttribute() "readAttribute()"
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function you can read an attribute from the file.
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\code
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std::string author;
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writer.readAttribute("author", author);
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int version;
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writer.writeAttribute("version", version);
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\endcode
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After you give all read commands you must call the
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\ref lemon::GraphReader::run() "run()" member
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function, which executes all the commands.
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\code
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reader.run();
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\endcode
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\anchor rwbackground
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\section types Background of Reading and Writing
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To read a map (on the nodes or edges)
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the \ref lemon::GraphReader "GraphReader"
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should know how to read a Value from the given map.
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By the default implementation the input operator reads a value from
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the stream and the type of the readed value is the value type of the given map.
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When the reader should skip a value in the stream, because you do not
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want to store it in a map, the reader skips a character sequence without
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whitespaces.
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If you want to change the functionality of the reader, you can use
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template parameters to specialize it. When you give a reading
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command for a map you can give a Reader type as template parameter.
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With this template parameter you can control how the Reader reads
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a value from the stream.
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The reader has the next structure:
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\code
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struct TypeReader {
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typedef TypeName Value;
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void read(std::istream& is, Value& value);
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};
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\endcode
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For example, the \c "strings" nodemap contains strings and you do not need
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the value of the string just the length. Then you can implement an own Reader
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struct.
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\code
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struct LengthReader {
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typedef int Value;
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void read(std::istream& is, Value& value) {
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std::string tmp;
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is >> tmp;
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value = tmp.length();
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}
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};
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...
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reader.readNodeMap<LengthReader>("strings", lengthMap);
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\endcode
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The global functionality of the reader class can be changed by giving a
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special template parameter to the GraphReader class. By default, the
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template parameter is \c DefaultReaderTraits. A reader traits class
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should provide an inner template class Reader for each type, and a
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DefaultReader for skipping a value.
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The specialization of writing is very similar to that of reading.
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322 |
\section undir Undirected graphs
|
deba@1532
|
323 |
|
athos@1540
|
324 |
In a file describing an undirected graph (undir graph, for short) you find an
|
athos@1540
|
325 |
\c undiredgeset section instead of the \c edgeset section. The first line of
|
athos@1540
|
326 |
the section describes the names of the maps on the undirected egdes and all
|
athos@1540
|
327 |
next lines describe one undirected edge with the the incident nodes and the
|
athos@1540
|
328 |
values of the map.
|
deba@1532
|
329 |
|
athos@1540
|
330 |
The format handles directed edge maps as a syntactical sugar???, if there
|
athos@1540
|
331 |
are two maps with names being the same with a \c '+' and a \c '-' prefix
|
athos@1540
|
332 |
then this will be read as a directed map.
|
deba@1532
|
333 |
|
deba@1532
|
334 |
\code
|
deba@1532
|
335 |
@undiredgeset
|
deba@1532
|
336 |
id capacity +flow -flow
|
deba@1532
|
337 |
32 2 1 4.3 2.0 0.0
|
deba@1532
|
338 |
21 21 5 2.6 0.0 2.6
|
deba@1532
|
339 |
21 12 8 3.4 0.0 0.0
|
deba@1532
|
340 |
\endcode
|
deba@1532
|
341 |
|
athos@1540
|
342 |
The \c edges section is changed to \c undiredges section. This section
|
deba@1532
|
343 |
describes labeled edges and undirected edges. The directed edge label
|
athos@1540
|
344 |
should start with a \c '+' or a \c '-' prefix to decide the direction
|
deba@1532
|
345 |
of the edge.
|
deba@1532
|
346 |
|
deba@1532
|
347 |
\code
|
deba@1532
|
348 |
@undiredges
|
deba@1532
|
349 |
undiredge 1
|
deba@1532
|
350 |
+edge 5
|
deba@1532
|
351 |
-back 5
|
deba@1532
|
352 |
\endcode
|
deba@1532
|
353 |
|
alpar@1631
|
354 |
There are similar classes to the \ref lemon::GraphReader "GraphReader" and
|
alpar@1631
|
355 |
\ref lemon::GraphWriter "GraphWriter" which
|
alpar@1631
|
356 |
handle the undirected graphs. These classes are
|
alpar@1631
|
357 |
the \ref lemon::UndirGraphReader "UndirGraphReader"
|
alpar@1631
|
358 |
and \ref lemon::UndirGraphWriter "UndirGraphWriter".
|
deba@1532
|
359 |
|
deba@1788
|
360 |
The \ref lemon::UndirGraphReader::readUndirEdgeMap() "readUndirEdgeMap()"
|
alpar@1631
|
361 |
function reads an undirected map and the
|
alpar@1631
|
362 |
\ref lemon::UndirGraphReader::readUndirEdge() "readUndirEdge()"
|
alpar@1631
|
363 |
reads an undirected edge from the file,
|
deba@1532
|
364 |
|
deba@1532
|
365 |
\code
|
deba@1532
|
366 |
reader.readUndirEdgeMap("capacity", capacityMap);
|
deba@1532
|
367 |
reader.readEdgeMap("flow", flowMap);
|
deba@1532
|
368 |
...
|
deba@1532
|
369 |
reader.readUndirEdge("undir_edge", undir_edge);
|
deba@1532
|
370 |
reader.readEdge("edge", edge);
|
deba@1532
|
371 |
\endcode
|
deba@1532
|
372 |
|
deba@1532
|
373 |
\section advanced Advanced features
|
deba@1532
|
374 |
|
athos@1540
|
375 |
The graph reader and writer classes give an easy way to read and write
|
athos@1540
|
376 |
graphs. But sometimes we want more advanced features. In this case we can
|
athos@1540
|
377 |
use the more general <tt>lemon reader and writer</tt> interface.
|
deba@1532
|
378 |
|
athos@1540
|
379 |
The LEMON file format is a section oriented file format. It contains one or
|
athos@1540
|
380 |
more sections, each starting with a line identifying its type
|
athos@1540
|
381 |
(the word starting with the \c \@ character).
|
deba@1532
|
382 |
The content of the section this way cannot contain line with \c \@ first
|
deba@1532
|
383 |
character. The file may contains comment lines with \c # first character.
|
deba@1532
|
384 |
|
alpar@1631
|
385 |
The \ref lemon::LemonReader "LemonReader"
|
alpar@1631
|
386 |
and \ref lemon::LemonWriter "LemonWriter"
|
alpar@1631
|
387 |
gives a framework to read and
|
deba@1532
|
388 |
write sections. There are various section reader and section writer
|
alpar@1631
|
389 |
classes which can be attached to a \ref lemon::LemonReader "LemonReader"
|
alpar@1631
|
390 |
or a \ref lemon::LemonWriter "LemonWriter".
|
deba@1532
|
391 |
|
deba@1532
|
392 |
There are default section readers and writers for reading and writing
|
athos@1540
|
393 |
item sets, and labeled items in the graph. These read and write
|
deba@1532
|
394 |
the format described above. Other type of data can be handled with own
|
deba@1532
|
395 |
section reader and writer classes which are inherited from the
|
alpar@1631
|
396 |
\c LemonReader::SectionReader or the
|
alpar@1631
|
397 |
\ref lemon::LemonWriter::SectionWriter "LemonWriter::SectionWriter"
|
alpar@1631
|
398 |
classes.
|
deba@1532
|
399 |
|
deba@1532
|
400 |
The next example defines a special section reader which reads the
|
deba@1532
|
401 |
\c \@description sections into a string:
|
deba@1532
|
402 |
|
deba@1532
|
403 |
\code
|
deba@1532
|
404 |
class DescriptionReader : LemonReader::SectionReader {
|
deba@1532
|
405 |
protected:
|
deba@1532
|
406 |
virtual bool header(const std::string& line) {
|
deba@1532
|
407 |
std::istringstream ls(line);
|
deba@1532
|
408 |
std::string head;
|
deba@1532
|
409 |
ls >> head;
|
deba@1532
|
410 |
return head == "@description";
|
deba@1532
|
411 |
}
|
deba@1532
|
412 |
|
deba@1532
|
413 |
virtual void read(std::istream& is) {
|
deba@1532
|
414 |
std::string line;
|
deba@1532
|
415 |
while (getline(is, line)) {
|
deba@1532
|
416 |
desc += line;
|
deba@1532
|
417 |
}
|
deba@1532
|
418 |
}
|
deba@1532
|
419 |
public:
|
deba@1532
|
420 |
|
deba@1532
|
421 |
typedef LemonReader::SectionReader Parent;
|
deba@1532
|
422 |
|
deba@1532
|
423 |
DescriptionReader(LemonReader& reader) : Parent(reader) {}
|
deba@1532
|
424 |
|
deba@1532
|
425 |
const std::string& description() const {
|
deba@1532
|
426 |
return description;
|
deba@1532
|
427 |
}
|
deba@1532
|
428 |
|
deba@1532
|
429 |
private:
|
deba@1532
|
430 |
std::string desc;
|
deba@1532
|
431 |
};
|
deba@1532
|
432 |
\endcode
|
deba@1532
|
433 |
|
deba@1532
|
434 |
The other advanced stuff of the generalized file format is that
|
deba@1532
|
435 |
multiple edgesets can be stored to the same nodeset. It can be used
|
athos@1540
|
436 |
for example as a network traffic matrix.
|
deba@1532
|
437 |
|
athos@1540
|
438 |
In our example there is a network with symmetric links and there are assymetric
|
deba@1532
|
439 |
traffic request on the network. This construction can be stored in an
|
deba@1842
|
440 |
undirected graph and in a directed \c ListEdgeSet class. The example
|
alpar@1631
|
441 |
shows the input with the \ref lemon::LemonReader "LemonReader" class:
|
deba@1532
|
442 |
|
deba@1532
|
443 |
\code
|
deba@1532
|
444 |
UndirListGraph network;
|
deba@1839
|
445 |
UndirListGraph::UndirEdgeMap<double> capacity;
|
deba@1842
|
446 |
ListEdgeSet<UndirListGraph> traffic(network);
|
deba@1842
|
447 |
ListEdgeSet<UndirListGraph>::EdgeMap<double> request(network);
|
deba@1532
|
448 |
|
deba@1532
|
449 |
LemonReader reader(std::cin);
|
deba@1839
|
450 |
NodeSetReader<UndirListGraph> nodesetReader(reader, network);
|
deba@1839
|
451 |
UndirEdgeSetReader<UndirListGraph>
|
deba@1839
|
452 |
undirEdgesetReader(reader, network, nodesetReader);
|
deba@1532
|
453 |
undirEdgesetReader.readEdgeMap("capacity", capacity);
|
deba@1842
|
454 |
EdgeSetReader<ListEdgeSet<UndirListGraph> >
|
deba@1839
|
455 |
edgesetReader(reader, traffic, nodesetReader);
|
deba@1532
|
456 |
edgesetReader.readEdgeMap("request", request);
|
deba@1532
|
457 |
|
deba@1532
|
458 |
reader.run();
|
deba@1532
|
459 |
\endcode
|
deba@1532
|
460 |
|
alpar@1631
|
461 |
Because both the \ref lemon::GraphReader "GraphReader"
|
alpar@1631
|
462 |
and the \ref lemon::UndirGraphReader "UndirGraphReader" can be converted
|
alpar@1631
|
463 |
to \ref lemon::LemonReader "LemonReader"
|
alpar@1631
|
464 |
and it can resolve the ID's of the items, the previous
|
alpar@1631
|
465 |
result can be achived with the \ref lemon::UndirGraphReader "UndirGraphReader"
|
alpar@1631
|
466 |
class, too.
|
deba@1532
|
467 |
|
deba@1532
|
468 |
|
deba@1532
|
469 |
\code
|
deba@1532
|
470 |
UndirListGraph network;
|
deba@1532
|
471 |
UndirListGraph::UndirEdgeSet<double> capacity;
|
deba@1842
|
472 |
ListEdgeSet<UndirListGraph> traffic(network);
|
deba@1842
|
473 |
ListEdgeSet<UndirListGraph>::EdgeMap<double> request(network);
|
deba@1532
|
474 |
|
deba@1842
|
475 |
UndirGraphReader<UndirListGraph> reader(std::cin, network);
|
deba@1532
|
476 |
reader.readEdgeMap("capacity", capacity);
|
deba@1842
|
477 |
EdgeSetReader<ListEdgeSet<UndirListGraph> >
|
deba@1842
|
478 |
edgesetReader(reader, traffic, reader);
|
deba@1532
|
479 |
edgesetReader.readEdgeMap("request", request);
|
deba@1532
|
480 |
|
deba@1532
|
481 |
reader.run();
|
deba@1532
|
482 |
\endcode
|
deba@1532
|
483 |
|
deba@1333
|
484 |
\author Balazs Dezso
|
deba@1114
|
485 |
*/
|
alpar@1631
|
486 |
} |