src/amd/amd_aat.c
author Alpar Juttner <alpar@cs.elte.hu>
Mon, 06 Dec 2010 13:09:21 +0100
changeset 1 c445c931472f
permissions -rw-r--r--
Import glpk-4.45

- Generated files and doc/notes are removed
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/* ========================================================================= */
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/* === AMD_aat ============================================================= */
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/* ========================================================================= */
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/* ------------------------------------------------------------------------- */
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/* AMD, Copyright (c) Timothy A. Davis,                                      */
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/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
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/* email: davis at cise.ufl.edu    CISE Department, Univ. of Florida.        */
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/* web: http://www.cise.ufl.edu/research/sparse/amd                          */
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/* ------------------------------------------------------------------------- */
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/* AMD_aat:  compute the symmetry of the pattern of A, and count the number of
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 * nonzeros each column of A+A' (excluding the diagonal).  Assumes the input
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 * matrix has no errors, with sorted columns and no duplicates
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 * (AMD_valid (n, n, Ap, Ai) must be AMD_OK, but this condition is not
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 * checked).
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 */
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#include "amd_internal.h"
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GLOBAL size_t AMD_aat   /* returns nz in A+A' */
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(
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    Int n,
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    const Int Ap [ ],
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    const Int Ai [ ],
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    Int Len [ ],        /* Len [j]: length of column j of A+A', excl diagonal*/
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    Int Tp [ ],         /* workspace of size n */
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    double Info [ ]
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)
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{
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    Int p1, p2, p, i, j, pj, pj2, k, nzdiag, nzboth, nz ;
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    double sym ;
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    size_t nzaat ;
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#ifndef NDEBUG
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    AMD_debug_init ("AMD AAT") ;
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    for (k = 0 ; k < n ; k++) Tp [k] = EMPTY ;
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    ASSERT (AMD_valid (n, n, Ap, Ai) == AMD_OK) ;
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#endif
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    if (Info != (double *) NULL)
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    {
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        /* clear the Info array, if it exists */
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        for (i = 0 ; i < AMD_INFO ; i++)
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        {
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            Info [i] = EMPTY ;
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        }
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        Info [AMD_STATUS] = AMD_OK ;
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    }
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    for (k = 0 ; k < n ; k++)
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    {
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        Len [k] = 0 ;
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    }
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    nzdiag = 0 ;
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    nzboth = 0 ;
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    nz = Ap [n] ;
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    for (k = 0 ; k < n ; k++)
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    {
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        p1 = Ap [k] ;
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        p2 = Ap [k+1] ;
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        AMD_DEBUG2 (("\nAAT Column: "ID" p1: "ID" p2: "ID"\n", k, p1, p2)) ;
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        /* construct A+A' */
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        for (p = p1 ; p < p2 ; )
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        {
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            /* scan the upper triangular part of A */
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            j = Ai [p] ;
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            if (j < k)
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            {
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                /* entry A (j,k) is in the strictly upper triangular part,
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                 * add both A (j,k) and A (k,j) to the matrix A+A' */
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                Len [j]++ ;
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                Len [k]++ ;
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                AMD_DEBUG3 (("    upper ("ID","ID") ("ID","ID")\n", j,k, k,j));
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                p++ ;
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            }
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            else if (j == k)
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            {
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                /* skip the diagonal */
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                p++ ;
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                nzdiag++ ;
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                break ;
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            }
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            else /* j > k */
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            {
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                /* first entry below the diagonal */
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                break ;
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            }
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            /* scan lower triangular part of A, in column j until reaching
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             * row k.  Start where last scan left off. */
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            ASSERT (Tp [j] != EMPTY) ;
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            ASSERT (Ap [j] <= Tp [j] && Tp [j] <= Ap [j+1]) ;
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            pj2 = Ap [j+1] ;
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            for (pj = Tp [j] ; pj < pj2 ; )
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            {
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                i = Ai [pj] ;
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                if (i < k)
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                {
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                    /* A (i,j) is only in the lower part, not in upper.
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                     * add both A (i,j) and A (j,i) to the matrix A+A' */
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                    Len [i]++ ;
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                    Len [j]++ ;
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                    AMD_DEBUG3 (("    lower ("ID","ID") ("ID","ID")\n",
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                        i,j, j,i)) ;
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                    pj++ ;
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                }
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                else if (i == k)
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                {
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                    /* entry A (k,j) in lower part and A (j,k) in upper */
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                    pj++ ;
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                    nzboth++ ;
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                    break ;
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                }
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                else /* i > k */
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                {
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                    /* consider this entry later, when k advances to i */
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                    break ;
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                }
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            }
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            Tp [j] = pj ;
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        }
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        /* Tp [k] points to the entry just below the diagonal in column k */
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        Tp [k] = p ;
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    }
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    /* clean up, for remaining mismatched entries */
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    for (j = 0 ; j < n ; j++)
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    {
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        for (pj = Tp [j] ; pj < Ap [j+1] ; pj++)
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        {
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            i = Ai [pj] ;
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            /* A (i,j) is only in the lower part, not in upper.
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             * add both A (i,j) and A (j,i) to the matrix A+A' */
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            Len [i]++ ;
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            Len [j]++ ;
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            AMD_DEBUG3 (("    lower cleanup ("ID","ID") ("ID","ID")\n",
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                i,j, j,i)) ;
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        }
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    }
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    /* --------------------------------------------------------------------- */
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    /* compute the symmetry of the nonzero pattern of A */
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    /* --------------------------------------------------------------------- */
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    /* Given a matrix A, the symmetry of A is:
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     *  B = tril (spones (A), -1) + triu (spones (A), 1) ;
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     *  sym = nnz (B & B') / nnz (B) ;
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     *  or 1 if nnz (B) is zero.
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     */
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    if (nz == nzdiag)
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    {
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        sym = 1 ;
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    }
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    else
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    {
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        sym = (2 * (double) nzboth) / ((double) (nz - nzdiag)) ;
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    }
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    nzaat = 0 ;
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    for (k = 0 ; k < n ; k++)
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    {
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        nzaat += Len [k] ;
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    }
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    AMD_DEBUG1 (("AMD nz in A+A', excluding diagonal (nzaat) = %g\n",
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        (double) nzaat)) ;
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    AMD_DEBUG1 (("   nzboth: "ID" nz: "ID" nzdiag: "ID" symmetry: %g\n",
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                nzboth, nz, nzdiag, sym)) ;
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    if (Info != (double *) NULL)
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    {
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        Info [AMD_STATUS] = AMD_OK ;
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        Info [AMD_N] = n ;
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        Info [AMD_NZ] = nz ;
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        Info [AMD_SYMMETRY] = sym ;         /* symmetry of pattern of A */
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        Info [AMD_NZDIAG] = nzdiag ;        /* nonzeros on diagonal of A */
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        Info [AMD_NZ_A_PLUS_AT] = nzaat ;   /* nonzeros in A+A' */
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    }
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    return (nzaat) ;
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}